View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1476_high_4 (Length: 250)
Name: NF1476_high_4
Description: NF1476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1476_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 75 - 239
Target Start/End: Original strand, 32218266 - 32218429
Alignment:
| Q |
75 |
gttatgattaatttatctgacagtataaaacatttttacattaacggtgtatagcttataccttgactttgtattcatgaatagaattttccgagactga |
174 |
Q |
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| T |
32218266 |
gttatgattaatttatc-gacagtataaaacatttttacattaacggtgtatagcttataccttgactttgtattcatgaatagaattttccaagactga |
32218364 |
T |
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| Q |
175 |
ttgtgtagcacccatttctgtgtctgtcttcaagagctaaacaaacactcttattactttttctt |
239 |
Q |
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| T |
32218365 |
ttgtgtagcacccatttctgtgtctgtcttcaagaactaaacaaacactcttattactttttctt |
32218429 |
T |
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Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 32218101 - 32218177
Alignment:
| Q |
1 |
ttgcatcctgttccaaacaccacaatgataatgaatctgtttcggttaagactttgatttgatattcatgtatagtt |
77 |
Q |
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| T |
32218101 |
ttgcatcctgttccaaacaccacaatgataatgaatttgtttcggtcaagactttgatttgatattcatgtatagtt |
32218177 |
T |
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