View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1476_low_1 (Length: 359)
Name: NF1476_low_1
Description: NF1476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1476_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 9 - 198
Target Start/End: Complemental strand, 26269548 - 26269357
Alignment:
| Q |
9 |
agcaaaggcaccggatctataagatgcatcaaagatttcaaggtcttaatttatatagcaacataaggacttgagattggaaattctatcttgtgattga |
108 |
Q |
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| T |
26269548 |
agcaaaggcaccggatctataagatgcatcaaagatttcaaggtcttaatttgtatagcaacttaaggacttgagattggaaattctatcttgtgattga |
26269449 |
T |
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| Q |
109 |
aattcaaaatcataagatatttttattatattgtc--nnnnnnnnttaccaaaataaatcatcaatgtttttaaagcccaaaaacacttttt |
198 |
Q |
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| T |
26269448 |
aattcaaaatcataagatatttttattatattgtcaaaaaaaaaattaccaaaataaatcatcaatgtttttaaagcccaaaaacacttttt |
26269357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 182 - 343
Target Start/End: Complemental strand, 26269243 - 26269087
Alignment:
| Q |
182 |
gcccaaaaacactttttatttgcatgcttatgaggaaaatgtaatcttgatgatcacatgtctatgtgagatcgatatttattacaatgataaaatcgtg |
281 |
Q |
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| T |
26269243 |
gcccaaaaacactttttatttgcatgcttatgagaaaaatgtaatcttgatgatcacatatc-atgtgagatcgatatttattacaatgataaaatcgtg |
26269145 |
T |
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| Q |
282 |
tatttgcggtgatatcaataattttgcttaatagagagagagaaaaaacatcttcatctctt |
343 |
Q |
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| T |
26269144 |
tatttgcggtgatatcaataattttgcttaatagagtgag----aaaacatcttcatctctt |
26269087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 47576160 - 47576227
Alignment:
| Q |
75 |
ggacttgagattggaaattctatcttgtgattgaaattcaaaatcataagatatttttattatattgt |
142 |
Q |
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| T |
47576160 |
ggacttgggattggaatatttatcttgtgatggaaatccacaatcctaagatttttttattatattgt |
47576227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 258
Target Start/End: Complemental strand, 41025791 - 41025750
Alignment:
| Q |
217 |
aaaatgtaatcttgatgatcacatgtctatgtgagatcgata |
258 |
Q |
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| T |
41025791 |
aaaatgttatcttgatgattacatgtatatgtgagatcgata |
41025750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 299
Target Start/End: Original strand, 19985189 - 19985229
Alignment:
| Q |
259 |
tttattacaatgataaaatcgtgtatttgcggtgatatcaa |
299 |
Q |
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| T |
19985189 |
tttattacgatgataaaatcgtgcatttgaggtgatatcaa |
19985229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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