View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1476_low_4 (Length: 285)

Name: NF1476_low_4
Description: NF1476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1476_low_4
NF1476_low_4
[»] chr4 (1 HSPs)
chr4 (1-277)||(51034937-51035216)
[»] chr7 (1 HSPs)
chr7 (111-194)||(10208427-10208510)
[»] chr3 (1 HSPs)
chr3 (111-194)||(48118336-48118419)
[»] chr5 (1 HSPs)
chr5 (117-201)||(40883261-40883345)
[»] chr1 (2 HSPs)
chr1 (114-194)||(33357918-33357998)
chr1 (229-277)||(33357817-33357865)
[»] chr6 (1 HSPs)
chr6 (1-30)||(18700008-18700037)


Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 51035216 - 51034937
Alignment:
Q  1 actctttatgatcatcatttgtttcattttcatttcatggttctcacaatgttccatgannnnnnnnn-cttctcaactgtctttattgttgttctatct 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||    
T  51035216 actctttatgatcatcatttgtttcattttcatttcatggttctcacaatgttccatgattttttttttcttctcaactgtctttattgttgttctatct 51035117  T
Q  100 tcnnnnnnnnn--gttacactttattgtttttctctaaatttatggttgctgttaaaaatttagaatgacacatttgtgatttgagcggttacaccttta 197  Q
    |            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  51035116 tttttttttttttgttacactttattgtttttctctaaatttatggttgctgttaaaaatttagaatgacacatttgtgatttgagcggttaca-cttta 51035018  T
Q  198 atctattggtttcaaaagtaactattatctgtctctcataatataaacctctttttcattcccc-ttttgttcttcatctc 277  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||    
T  51035017 atctattggtttcaaaagtaactattatctgtctctcatgatataaacctctttttcattcccctttttgttcttcttctc 51034937  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 111 - 194
Target Start/End: Complemental strand, 10208510 - 10208427
Alignment:
Q  111 gttacactttattgtttttctctaaatttatggttgctgttaaaaatttagaatgacacatttgtgatttgagcggttacacct 194  Q
    |||||||||||||||| |||||||||   ||| ||||| ||||||||| ||||| | ||||||| |||||||||||||||||||    
T  10208510 gttacactttattgttgttctctaaagcaatgattgctattaaaaattgagaatcaaacatttgcgatttgagcggttacacct 10208427  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 111 - 194
Target Start/End: Original strand, 48118336 - 48118419
Alignment:
Q  111 gttacactttattgtttttctctaaatttatggttgctgttaaaaatttagaatgacacatttgtgatttgagcggttacacct 194  Q
    |||| ||||||||||| |||||||||   ||| ||||| ||||||||| ||||||| ||||||||||| |||||||||||||||    
T  48118336 gttatactttattgttgttctctaaagcaatgattgctattaaaaattgagaatgaaacatttgtgatctgagcggttacacct 48118419  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 117 - 201
Target Start/End: Complemental strand, 40883345 - 40883261
Alignment:
Q  117 ctttattgtttttctctaaatttatggttgctgttaaaaatttagaatgacacatttgtgatttgagcggttacacctttaatct 201  Q
    |||||||||| |||||||||   ||||||||| ||||||||| ||||||  |||| |||||||||||| |||||| |||||||||    
T  40883345 ctttattgttgttctctaaagcaatggttgcttttaaaaattgagaatggaacatctgtgatttgagcagttacaactttaatct 40883261  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 114 - 194
Target Start/End: Complemental strand, 33357998 - 33357918
Alignment:
Q  114 acactttattgtttttctctaaatttatggttgctgttaaaaatttagaatgacacatttgtgatttgagcggttacacct 194  Q
    ||||||||||||||||||| |||   ||| |||||| |||||||| ||||||| |||| | ||||||||||||||||||||    
T  33357998 acactttattgtttttctcgaaagcaatgattgctgataaaaattgagaatgaaacatctttgatttgagcggttacacct 33357918  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 277
Target Start/End: Complemental strand, 33357865 - 33357817
Alignment:
Q  229 tctctcataatataaacctctttttcattccccttttgttcttcatctc 277  Q
    ||||||| ||| |||||||||||||||||| |||||| |||||| ||||    
T  33357865 tctctcacaatgtaaacctctttttcattcaccttttattcttcttctc 33357817  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 18700037 - 18700008
Alignment:
Q  1 actctttatgatcatcatttgtttcatttt 30  Q
    ||||||||||||||||||||||||||||||    
T  18700037 actctttatgatcatcatttgtttcatttt 18700008  T

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