View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1476_low_9 (Length: 234)

Name: NF1476_low_9
Description: NF1476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1476_low_9
NF1476_low_9
[»] chr3 (5 HSPs)
chr3 (1-220)||(21213990-21214211)
chr3 (1-89)||(23209428-23209516)
chr3 (1-56)||(10251926-10251981)
chr3 (1-56)||(22456156-22456211)
chr3 (1-54)||(47444124-47444177)
[»] chr5 (5 HSPs)
chr5 (1-54)||(8959559-8959612)
chr5 (1-56)||(28906985-28907040)
chr5 (1-56)||(28943380-28943435)
chr5 (1-54)||(1144685-1144738)
chr5 (11-56)||(20914775-20914820)
[»] chr8 (3 HSPs)
chr8 (1-56)||(17713138-17713193)
chr8 (1-56)||(14576332-14576387)
chr8 (1-54)||(38072114-38072167)
[»] chr6 (3 HSPs)
chr6 (1-56)||(3888342-3888397)
chr6 (1-56)||(1130434-1130489)
chr6 (1-56)||(13854878-13854932)
[»] chr4 (6 HSPs)
chr4 (1-56)||(8013271-8013326)
chr4 (1-40)||(53848398-53848437)
chr4 (1-56)||(23978297-23978352)
chr4 (11-56)||(5222462-5222507)
chr4 (11-56)||(37788362-37788407)
chr4 (11-56)||(43980409-43980454)
[»] chr2 (4 HSPs)
chr2 (1-56)||(26998234-26998289)
chr2 (1-52)||(32273592-32273643)
chr2 (1-54)||(16179888-16179940)
chr2 (1-41)||(4891827-4891867)
[»] scaffold0330 (1 HSPs)
scaffold0330 (1-55)||(3086-3140)
[»] chr1 (4 HSPs)
chr1 (1-56)||(1820313-1820368)
chr1 (1-56)||(16661432-16661487)
chr1 (155-198)||(46653891-46653934)
chr1 (1-56)||(51840685-51840740)
[»] chr7 (2 HSPs)
chr7 (1-54)||(24151767-24151820)
chr7 (11-56)||(48341586-48341631)


Alignment Details
Target: chr3 (Bit Score: 124; Significance: 6e-64; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 21214211 - 21213990
Alignment:
Q  1 attaaatttgataaaagttggtattttttacttataatttatgataaagaaaatgannnnnnnnngcttatagtttagaatggagggagtattttcttag 100  Q
    ||||||| |||||||||||| | |||||| ||||||||||  || |||||||||||         ||||||| ||||  | ||||||||||||| |||||    
T  21214211 attaaatgtgataaaagttgatcttttttgcttataatttgggacaaagaaaatgagttttttttgcttataatttaagacggagggagtatttccttag 21214112  T
Q  101 aactcaattatggccaatgacagtgtaacttccacaaccagacatgctcaagtttcttataataatttgtctactacacacaaacactacatcctcaac- 199  Q
    ||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  21214111 aactcaattatggtcaatgacagtgtaacttccacaactggacatgctcaagtttcttataataatttgtctactacacacaaacactacatcctcaacc 21214012  T
Q  200 -ctctactattcatgaaccttc 220  Q
     |||||||||||||||||||||    
T  21214011 tctctactattcatgaaccttc 21213990  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 23209428 - 23209516
Alignment:
Q  1 attaaatttgataaaagttggtattttttacttataatttatgataaagaaaatgannnnnnnnngcttatagtttagaatggagggag 89  Q
    ||||||| |||||||||||||| |||||| ||||||||||| || |||||||||||         ||||||| ||||||||||||||||    
T  23209428 attaaatatgataaaagttggtcttttttgcttataatttaagacaaagaaaatgagttttttttgcttataatttagaatggagggag 23209516  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 10251981 - 10251926
Alignment:
Q  1 attaaatttgataaaagttggtattttttacttataatttatgataaagaaaatga 56  Q
    ||||||| ||||||||||||||||||||| ||||||||||  || |||||||||||    
T  10251981 attaaatatgataaaagttggtattttttgcttataatttgagacaaagaaaatga 10251926  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 22456156 - 22456211
Alignment:
Q  1 attaaatttgataaaagttggtattttttacttataatttatgataaagaaaatga 56  Q
    ||||||| |||||||||||||| |||||| ||||||||||  ||||||||||||||    
T  22456156 attaaatatgataaaagttggtcttttttgcttataatttgggataaagaaaatga 22456211  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 47444124 - 47444177
Alignment:
Q  1 attaaatttgataaaagttggtattttttacttataatttatgataaagaaaat 54  Q
    ||||||| |||||||||||| |||||||| ||||||||||  || |||||||||    
T  47444124 attaaatatgataaaagttgatattttttgcttataatttgggacaaagaaaat 47444177  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 8959612 - 8959559
Alignment:
Q  1 attaaatttgataaaagttggtattttttacttataatttatgataaagaaaat 54  Q
    ||||||| |||||||||||||| |||||| ||||||||||| ||||||||||||    
T  8959612 attaaatatgataaaagttggtcttttttgcttataatttaggataaagaaaat 8959559  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 28907040 - 28906985
Alignment:
Q  1 attaaatttgataaaagttggtattttttacttataatttatgataaagaaaatga 56  Q
    ||||||| |||||| ||||||| |||||| ||||||||||  ||||||||||||||    
T  28907040 attaaatatgataacagttggtcttttttgcttataatttgggataaagaaaatga 28906985  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 28943435 - 28943380
Alignment:
Q  1 attaaatttgataaaagttggtattttttacttataatttatgataaagaaaatga 56  Q
    ||||||| |||||| ||||||| |||||| ||||||||||  ||||||||||||||    
T  28943435 attaaatatgataacagttggtcttttttgcttataatttgggataaagaaaatga 28943380  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 1144685 - 1144738
Alignment:
Q  1 attaaatttgataaaagttggtattttttacttataatttatgataaagaaaat 54  Q
    ||||||| |||||||||||||| |||||| ||||||||||| || ||| |||||    
T  1144685 attaaatatgataaaagttggtcttttttgcttataatttaggacaaaaaaaat 1144738  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 20914820 - 20914775
Alignment:
Q  11 ataaaagttggtattttttacttataatttatgataaagaaaatga 56  Q
    ||||||||||||||||||| |||||| |||| || |||||||||||    
T  20914820 ataaaagttggtattttttgcttatattttaagacaaagaaaatga 20914775  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 17713193 - 17713138
Alignment:
Q  1 attaaatttgataaaagttggtattttttacttataatttatgataaagaaaatga 56  Q
    ||||||| |||||||||||||| |||||||||||||||||  || |||||||||||    
T  17713193 attaaatatgataaaagttggtcttttttacttataatttgggacaaagaaaatga 17713138  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 14576332 - 14576387
Alignment:
Q  1 attaaatttgataaaagttggtattttttacttataatttatgataaagaaaatga 56  Q
    ||||||| |||||||||||| | ||||||  |||||||||| ||||||||||||||    
T  14576332 attaaatatgataaaagttgatctttttttattataatttaggataaagaaaatga 14576387  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 38072167 - 38072114
Alignment:
Q  1 attaaatttgataaaagttggtattttttacttataatttatgataaagaaaat 54  Q
    ||||||| |||||||||||||| |||||| ||||||||||  || |||||||||    
T  38072167 attaaatatgataaaagttggtcttttttgcttataatttgggacaaagaaaat 38072114  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 3888397 - 3888342
Alignment:
Q  1 attaaatttgataaaagttggtattttttacttataatttatgataaagaaaatga 56  Q
    ||||||| |||||||||||||| |||||| |||||||||||  |||||||||||||    
T  3888397 attaaatatgataaaagttggtcttttttgcttataatttagaataaagaaaatga 3888342  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 1130489 - 1130434
Alignment:
Q  1 attaaatttgataaaagttggtattttttacttataatttatgataaagaaaatga 56  Q
    ||||||| |||||||||||||| |||||| ||||||||||  || |||||||||||    
T  1130489 attaaatatgataaaagttggttttttttgcttataatttgggacaaagaaaatga 1130434  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 13854878 - 13854932
Alignment:
Q  1 attaaatttgataaaagttggtattttttacttataatttatgataaagaaaatga 56  Q
    ||||||| |||||||||||||| |||||  ||||||||||| ||||||||||||||    
T  13854878 attaaatatgataaaagttggtctttttg-cttataatttaagataaagaaaatga 13854932  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 8013271 - 8013326
Alignment:
Q  1 attaaatttgataaaagttggtattttttacttataatttatgataaagaaaatga 56  Q
    ||||||| |||||||||||||| |||||||||||||||||  || |||||||||||    
T  8013271 attaaatatgataaaagttggtcttttttacttataatttgggacaaagaaaatga 8013326  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 53848437 - 53848398
Alignment:
Q  1 attaaatttgataaaagttggtattttttacttataattt 40  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  53848437 attaaatttgataaaagttggtcttttttacttataattt 53848398  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 23978297 - 23978352
Alignment:
Q  1 attaaatttgataaaagttggtattttttacttataatttatgataaagaaaatga 56  Q
    ||||||| |||||||||||||| |||||  ||||||||||  ||||||||||||||    
T  23978297 attaaatatgataaaagttggtctttttcgcttataatttgggataaagaaaatga 23978352  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 5222462 - 5222507
Alignment:
Q  11 ataaaagttggtattttttacttataatttatgataaagaaaatga 56  Q
    |||||||||||| ||||||||||||| |||| || |||||||||||    
T  5222462 ataaaagttggtcttttttacttatattttaggacaaagaaaatga 5222507  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 37788407 - 37788362
Alignment:
Q  11 ataaaagttggtattttttacttataatttatgataaagaaaatga 56  Q
    |||||||||||| ||||||||||||| |||  ||||||||||||||    
T  37788407 ataaaagttggtcttttttacttatattttgagataaagaaaatga 37788362  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 43980454 - 43980409
Alignment:
Q  11 ataaaagttggtattttttacttataatttatgataaagaaaatga 56  Q
    |||||||||||||||||||||||||| |||| || |||||| ||||    
T  43980454 ataaaagttggtattttttacttatattttaagacaaagaatatga 43980409  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 26998289 - 26998234
Alignment:
Q  1 attaaatttgataaaagttggtattttttacttataatttatgataaagaaaatga 56  Q
    ||||||| |||||||||||||| |||||| ||||||||||| || |||||||||||    
T  26998289 attaaatatgataaaagttggtcttttttgcttataatttaggacaaagaaaatga 26998234  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 32273643 - 32273592
Alignment:
Q  1 attaaatttgataaaagttggtattttttacttataatttatgataaagaaa 52  Q
    ||||||| |||||||||||||| |||||| ||||||||||| || |||||||    
T  32273643 attaaatatgataaaagttggtcttttttgcttataatttaggacaaagaaa 32273592  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 16179888 - 16179940
Alignment:
Q  1 attaaatttgataaaagttggtattttttacttataatttatgataaagaaaat 54  Q
    ||||||| |||||||| ||||| |||||||||||||||||  ||||||||||||    
T  16179888 attaaatatgataaaaattggtcttttttacttataattt-ggataaagaaaat 16179940  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 4891827 - 4891867
Alignment:
Q  1 attaaatttgataaaagttggtattttttacttataattta 41  Q
    ||||||| |||||||||||| |||||||| |||||||||||    
T  4891827 attaaatatgataaaagttgatattttttgcttataattta 4891867  T

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Target: scaffold0330 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 3140 - 3086
Alignment:
Q  1 attaaatttgataaaagttggtattttttacttataatttatgataaagaaaatg 55  Q
    ||||||| |||||||||||| | |||||| ||||||||||| |||||||||||||    
T  3140 attaaatatgataaaagttgatcttttttgcttataatttaggataaagaaaatg 3086  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 1820368 - 1820313
Alignment:
Q  1 attaaatttgataaaagttggtattttttacttataatttatgataaagaaaatga 56  Q
    |||||||  |||||||||| || ||||||||||||| |||| ||||||||||||||    
T  1820368 attaaataggataaaagtttgtcttttttacttatattttaggataaagaaaatga 1820313  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 16661487 - 16661432
Alignment:
Q  1 attaaatttgataaaagttggtattttttacttataatttatgataaagaaaatga 56  Q
    ||||||| |||||| ||||||| |||||| ||||||||||  ||||||||||||||    
T  16661487 attaaatatgataacagttggtcttttttgcttataatttgggataaagaaaatga 16661432  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 198
Target Start/End: Original strand, 46653891 - 46653934
Alignment:
Q  155 tcttataataatttgtctactacacacaaacactacatcctcaa 198  Q
    ||||||||||| |||||||| ||||||||||||||||| |||||    
T  46653891 tcttataataacttgtctaccacacacaaacactacattctcaa 46653934  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 51840685 - 51840740
Alignment:
Q  1 attaaatttgataaaagttggtattttttacttataatttatgataaagaaaatga 56  Q
    ||||||| | ||||||||| || |||||||||||||||||| || |||||||||||    
T  51840685 attaaatataataaaagttagtcttttttacttataatttacgacaaagaaaatga 51840740  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 24151767 - 24151820
Alignment:
Q  1 attaaatttgataaaagttggtattttttacttataatttatgataaagaaaat 54  Q
    ||||||| |||||||||||||| |||||| ||||||||||  || |||||||||    
T  24151767 attaaatatgataaaagttggtcttttttgcttataatttgggacaaagaaaat 24151820  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 48341586 - 48341631
Alignment:
Q  11 ataaaagttggtattttttacttataatttatgataaagaaaatga 56  Q
    ||||||| |||||||||||||||||| |||| |||||| |||||||    
T  48341586 ataaaagatggtattttttacttatattttaggataaaaaaaatga 48341631  T

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