View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14770_high_1 (Length: 468)
Name: NF14770_high_1
Description: NF14770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14770_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 25 - 441
Target Start/End: Original strand, 28265059 - 28265474
Alignment:
| Q |
25 |
tcattgaagtcaaatgcatagcctcttccttttgcttttcacttctctttcttttcctctttagtaatgcatatgctactaatgctaccgctggtataat |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| | |||||||||| |||||| || || |||||| |
|
|
| T |
28265059 |
tcattgaagtcaaatgcatagcctcttccttttgcttttcacttc-ctctcttttcctctttagtattacatatgctaccaatgctcccactcctataat |
28265157 |
T |
|
| Q |
125 |
tacaacccctaaagagacggttagtatcacaactaatcttgtctctttactattactatcatcacttttctccaaagtggaattaaattcccatgacaaa |
224 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28265158 |
tacagcccctaaagagactgttagtatcacaactaatcttgtatctttactattactatcatcacttttctccaaattggaattaaattcccatgacaaa |
28265257 |
T |
|
| Q |
225 |
agagtatttaattctcttatgttacctattgaagcagaaaatcctatggtaacccattcaggcaaaaccttcattaaatcaatttcatatgaaaggctaa |
324 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28265258 |
agattatttaattctcttatgttacctattgaagcagaaaatcctatggtaacccattcaggcaaaaccttcattaaatcaatttcatatgaaaggctag |
28265357 |
T |
|
| Q |
325 |
ttttttcttcaggattagaagttctttggtatttccaagatactgttaaattcttggttgtagaattgaaactaatccatacctcagcaatgtctccact |
424 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28265358 |
ttttttcttctggatttgaagttctttggtatttccaagatactgttaaattcttggttgtagaattgaaactaatccatacctcagcaatgtctccact |
28265457 |
T |
|
| Q |
425 |
gtgtagactagcattcc |
441 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
28265458 |
gtgtagactagcattcc |
28265474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 25 - 441
Target Start/End: Original strand, 28305076 - 28305492
Alignment:
| Q |
25 |
tcattgaagtcaaatgcatagcctcttccttttgcttttcacttctctttcttttcctctttagtaatgcatatgctactaatgctaccgctggtataat |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||| || || |||||| |
|
|
| T |
28305076 |
tcattgaagtcaaatgcatagcctcttccttttgcttttcacttctctttcttttcctctttagtattacatatgctaccaatgctcccactcctataat |
28305175 |
T |
|
| Q |
125 |
tacaacccctaaagagacggttagtatcacaactaatcttgtctctttactattactatcatcacttttctccaaagtggaattaaattcccatgacaaa |
224 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28305176 |
tacagcccctaaagagactgttagtatcacaactaatcttgtatctttactattactatcatcacttttctccaaattggaattaaattcccatgacaaa |
28305275 |
T |
|
| Q |
225 |
agagtatttaattctcttatgttacctattgaagcagaaaatcctatggtaacccattcaggcaaaaccttcattaaatcaatttcatatgaaaggctaa |
324 |
Q |
| |
|
||| |||||| ||||| ||| ||| ||| |||||||||||| || |||||||||||||| ||||| ||| | |||||||||| ||||||||| || |
|
|
| T |
28305276 |
agattatttacttctccattgtaaccagttgcagcagaaaatccaattgtaacccattcaggtaaaactttcttgaaatcaatttgatatgaaagattag |
28305375 |
T |
|
| Q |
325 |
ttttttcttcaggattagaagttctttggtatttccaagatactgttaaattcttggttgtagaattgaaactaatccatacctcagcaatgtctccact |
424 |
Q |
| |
|
||||||||| |||| |||| || |||| |||| ||||||||| || ||||||||||||||||||||| | |||||||||||||||||| |||||||||| |
|
|
| T |
28305376 |
ttttttcttgaggactagaggtcgtttgatattcccaagatacagtcaaattcttggttgtagaattgtacctaatccatacctcagcagtgtctccact |
28305475 |
T |
|
| Q |
425 |
gtgtagactagcattcc |
441 |
Q |
| |
|
|||| ||| ||||||| |
|
|
| T |
28305476 |
atgtaaacttgcattcc |
28305492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 25 - 424
Target Start/End: Original strand, 28294874 - 28295273
Alignment:
| Q |
25 |
tcattgaagtcaaatgcatagcctcttccttttgcttttcacttctctttcttttcctctttagtaatgcatatgctactaatgctaccgctggtataat |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| | |||||| ||||||||||||||| || || ||||| |
|
|
| T |
28294874 |
tcattgaagtcaaatgcatagcctcttccttttgcttattacttctctttcttttcctccaaaataatgcgtatgctactaatgctcccactcctataac |
28294973 |
T |
|
| Q |
125 |
tacaacccctaaagagacggttagtatcacaactaatcttgtctctttactattactatcatcacttttctccaaagtggaattaaattcccatgacaaa |
224 |
Q |
| |
|
|| |||||| |||| || |||||||| | |||||||||||||||||| | ||||||||| ||||| | |||||||||| || ||||||||||||||| |
|
|
| T |
28294974 |
tataaccccacaagaaaccgttagtattataactaatcttgtctcttttgttttactatcaccacttgtggccaaagtggagttgaattcccatgacaaa |
28295073 |
T |
|
| Q |
225 |
agagtatttaattctcttatgttacctattgaagcagaaaatcctatggtaacccattcaggcaaaaccttcattaaatcaatttcatatgaaaggctaa |
324 |
Q |
| |
|
||| |||||||||| | | || | ||| |||||||||||||| |||| ||||||||||| ||| ||||||||||||||| | |||||| ||| |
|
|
| T |
28295074 |
agataatttaattcttgaacataacttgttgcagcagaaaatcctacagtaatccattcaggcataactttcattaaatcaattgaaattgaaagactag |
28295173 |
T |
|
| Q |
325 |
ttttttcttcaggattagaagttctttggtatttccaagatactgttaaattcttggttgtagaattgaaactaatccatacctcagcaatgtctccact |
424 |
Q |
| |
|
| ||||||| |||||| || || ||||||||||||||||||| || ||||||||||||||||||||| | |||||||||||||||||| |||||||||| |
|
|
| T |
28295174 |
tattttcttgaggatttgaggtagtttggtatttccaagatacggtcaaattcttggttgtagaattgtacctaatccatacctcagcagtgtctccact |
28295273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 36 - 429
Target Start/End: Complemental strand, 28288666 - 28288270
Alignment:
| Q |
36 |
aaatgcatagcctcttccttttgcttttcacttctctttcttttcctctttagtaatgcatatgctactaatgctaccgctggtataattacaaccccta |
135 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||| |||||||| |||||||||||| | | | |||| || || |||| ||||| ||| |
|
|
| T |
28288666 |
aaatgcatagcctcttcctttttctttttacttctctttattttcctccaaagtaatgcatatattgccagtgctcccactcccataactacaatcccac |
28288567 |
T |
|
| Q |
136 |
aagagacggttagtatcacaactaatcttgtctctttactattactatcat---cacttttctccaaagtggaattaaattcccatgacaaaagagtatt |
232 |
Q |
| |
|
| | ||| | |||||||||||||||||| ||| ||| ||||| |||||| |||||| |||||||||||| | |||||||| || | ||| | | |
|
|
| T |
28288566 |
acgtgactgctagtatcacaactaatctagtcctttttgtattattatcattatcactttgttccaaagtggaactgaattcccaagatagaagtttgtg |
28288467 |
T |
|
| Q |
233 |
taattctcttatgttacctattgaagcagaaaatcctatggtaacccattcaggcaaaaccttcattaaatcaatttcatatgaaaggctaattttttct |
332 |
Q |
| |
|
||||| ||| |||| |||||||||||| |||||| |||||||||||||| | ||||| ||||| |||||||||||||||| ||| |||||||| |
|
|
| T |
28288466 |
cttttctccaatggaacctgttgaagcagaaattcctatagtaacccattcaggtaggacctttattaagtcaatttcatatgaaatactagttttttct |
28288367 |
T |
|
| Q |
333 |
tcaggattagaagttctttggtatttccaagatactgttaaattcttggttgtagaattgaaactaatccatacctcagcaatgtctccactgtgta |
429 |
Q |
| |
|
| ||||| | | || |||| |||||||||||||| | ||||| |||||||||||||| | ||||||||||||||| | | |||||||| |||| |
|
|
| T |
28288366 |
tgaggatcataggtgttttgatatttccaagatacattcaaatttttggttgtagaattatagttaatccatacctcagtagtttctccactatgta |
28288270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 248 - 441
Target Start/End: Complemental strand, 28278597 - 28278404
Alignment:
| Q |
248 |
acctattgaagcagaaaatcctatggtaacccattcaggcaaaaccttcattaaatcaatttcatatgaaaggctaattttttcttcaggattagaagtt |
347 |
Q |
| |
|
|||| ||| |||||||||||| | || ||||||||||| | |||||||| |||||||||| ||||||||| || ||||||||| |||| ||| || |
|
|
| T |
28278597 |
acctgttgcagcagaaaatccaacagttacccattcaggtaggaccttcatcaaatcaatttgatatgaaagattagttttttcttgaggactaggggta |
28278498 |
T |
|
| Q |
348 |
ctttggtatttccaagatactgttaaattcttggttgtagaattgaaactaatccatacctcagcaatgtctccactgtgtagactagcattcc |
441 |
Q |
| |
|
|||| |||| ||||||||| || |||||||||||| |||||||| | |||||||||||||||||| |||||||||| |||| ||| ||||||| |
|
|
| T |
28278497 |
gtttgatattcccaagatacagtcaaattcttggttttagaattgtagctaatccatacctcagcattgtctccactatgtaaacttgcattcc |
28278404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University