View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14770_high_2 (Length: 309)
Name: NF14770_high_2
Description: NF14770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14770_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 101 - 298
Target Start/End: Original strand, 419112 - 419296
Alignment:
| Q |
101 |
taaatataacatacattgaaattaattaatgcgggtaaaagtaaagttaaatttaggatcagtacctttcttactaacaagctaagcacaataataatat |
200 |
Q |
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| T |
419112 |
taaatataacatacattgaaattaattaatgcgggtaaaagtaaagttaaatttagaatcagtacctttctaactaacaagc--------acaataatat |
419203 |
T |
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| Q |
201 |
attagaaagcttaaaatgaaattaatattgggagaaaggttacaagtgtgacttcacttaactattacatactccactccattattcttgttgttgcc |
298 |
Q |
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| T |
419204 |
attagaaagcttaaaatgaaattaatattgggagaaaggttacaagtgtgacttcacttaactattacat-----actccattattcttgttgttgcc |
419296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 418964 - 419017
Alignment:
| Q |
1 |
aattcttcttcagttacactcctctaatggaatccatattcaaatttcgatcaa |
54 |
Q |
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| T |
418964 |
aattcttcttcagttacactcctctaatggaatccatattcaaatttcgatcaa |
419017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 92
Target Start/End: Original strand, 419035 - 419072
Alignment:
| Q |
55 |
atatactattaattaatttactaataacatttgtttat |
92 |
Q |
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| T |
419035 |
atatactattaattaatttactaataacatttgtttat |
419072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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