View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14771_high_1 (Length: 773)

Name: NF14771_high_1
Description: NF14771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14771_high_1
NF14771_high_1
[»] chr6 (10 HSPs)
chr6 (13-585)||(7871033-7871612)
chr6 (606-758)||(7870854-7871006)
chr6 (279-413)||(7813982-7814116)
chr6 (282-393)||(7806761-7806872)
chr6 (279-409)||(15398186-15398316)
chr6 (279-409)||(15409973-15410103)
chr6 (140-217)||(7860097-7860174)
chr6 (336-392)||(23951615-23951671)
chr6 (13-91)||(7860229-7860307)
chr6 (290-412)||(10415656-10415778)
[»] chr7 (1 HSPs)
chr7 (286-410)||(19317660-19317784)
[»] chr1 (1 HSPs)
chr1 (288-404)||(37997596-37997712)
[»] chr5 (1 HSPs)
chr5 (315-401)||(24005974-24006060)
[»] scaffold0571 (1 HSPs)
scaffold0571 (279-392)||(411-524)


Alignment Details
Target: chr6 (Bit Score: 492; Significance: 0; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 13 - 585
Target Start/End: Complemental strand, 7871612 - 7871033
Alignment:
Q  13 gagatgaaactaacgggattcaatgtgtggaaacgcagactaagatgcaactcctcaacacaatgctgttttgcggcttttagccattttgtcacattaa 112  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  7871612 gagatgaaaataacgggattcaatgtgtggaaacgcagactaagatgtaactcctcaacacaatgctgttttgcagcttttagccattttgtcacattaa 7871513  T
Q  113 acccggtattggggtgtccatagaaaaagtttaggtgaaatgatttgaggggttggttggttgaaggacgagagagcatgaga-----gtgtcaacaaaa 207  Q
    || |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||     ||||||||||||    
T  7871512 acacggtatcggggtgtccatagaaaaagtttaggtgaaatgatttgaggggttgattggttgaaggacgagagagcatgagatgagagtgtcaacaaaa 7871413  T
Q  208 cgacaaaagcaatcaaaggtttcatagtcttgcttggtttcatatttgttgtcgacttcatagtcaaaggcgagaacagggagtgaatagcatagtggga 307  Q
     |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7871412 agacaaaagcaatcaaaggtttcatagtcttgcttggtttcatattttttgtcgacttcatagtcaaaggcgagaacagggagtgaatagcatagtggga 7871313  T
Q  308 tccaccgtttggaaagaagggtcgtagtgaaagcgagtttggttgggaggaaagagagaatgtaagacaacaactcatcaggtaaactgctgattctgtc 407  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  7871312 tccaccgtttggaaagaagggttgtagtgaaagcgagtttggttgggaggaaagagagaatgtaagacaacaactcatcaggtaaactactgattctgtc 7871213  T
Q  408 caccattttcgagtcctgagtggaacgggatgaaggaagaaagcgtttgtaagagcaatttccc-tcttttgaaaattcagtaacatgttttttatttct 506  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  7871212 caccattttcgagtcctgagtggaacgggatgaaggaagaaaaagtttgtaagagcaatttcccttcttttgaaaattcagtaacatgttttttatttct 7871113  T
Q  507 tgtgctgctg-aactagacttcatgttttggttgacctaatttcaaacaatgaagatatgaatgaatacaacatcttctt 585  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7871112 tgtgctgctgaaactagacttcatgttttcgttgacctaatttcaaacaatgaagatatgaatgaatacaacatcttctt 7871033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 606 - 758
Target Start/End: Complemental strand, 7871006 - 7870854
Alignment:
Q  606 tctaagaggtgatgaataatttaatacaagaaagatcatacaaattaaaattcaaaatcttatttaaatacgattacaaatataagttagttaaattgtt 705  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  7871006 tctaagaggtgatga-tagtttaatacaagaaagatcatacaaattaaaattcaaaatcctatttaaatacgattacaaatataagttagttaaattgtt 7870908  T
Q  706 gtggaaatcacaaatatctt-ttgtttgagtgtttcattagggttcataaatac 758  Q
    |||||||| | ||||||||| |||||||||||||| ||||||||||||||||||    
T  7870907 gtggaaataaaaaatatcttgttgtttgagtgtttgattagggttcataaatac 7870854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 279 - 413
Target Start/End: Complemental strand, 7814116 - 7813982
Alignment:
Q  279 gagaacagggagtgaatagcatagtgggatccaccgtttggaaagaagggtcgtagtgaaagcgagtttggttgggaggaaagagagaatgtaagacaac 378  Q
    |||| |||||||||||||||| |||  | |||| || |||||||| | ||| |||| |||||||||||| |||||||| ||||||||||||| ||||||     
T  7814116 gagagcagggagtgaatagcagagtccggtccatcgcttggaaagtacggttgtagagaaagcgagtttagttgggagaaaagagagaatgtgagacaat 7814017  T
Q  379 aactcatcaggtaaactgctgattctgtccaccat 413  Q
    |||||||| ||||||  ||||||||| ||||||||    
T  7814016 aactcatccggtaaatcgctgattctatccaccat 7813982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 282 - 393
Target Start/End: Original strand, 7806761 - 7806872
Alignment:
Q  282 aacagggagtgaatagcatagtgggatccaccgtttggaaagaagggtcgtagtgaaagcgagtttggttgggaggaaagagagaatgtaagacaacaac 381  Q
    |||||||||||||||||| |||| | ||||||| |||||||||| || |||||| ||||| ||||||||| |||| |||||||||||||||  ||  |||    
T  7806761 aacagggagtgaatagcagagtgcggtccaccgcttggaaagaatggacgtagtaaaagccagtttggtttggagaaaagagagaatgtaaagcagtaac 7806860  T
Q  382 tcatcaggtaaa 393  Q
    ||||| ||||||    
T  7806861 tcatctggtaaa 7806872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 279 - 409
Target Start/End: Complemental strand, 15398316 - 15398186
Alignment:
Q  279 gagaacagggagtgaatagcatagtgggatccaccgtttggaaagaagggtcgtagtgaaagcgagtttggttgggaggaaagagagaatgtaagacaac 378  Q
    |||||| |||||||||||| | |||||| ||||||| || ||||||||||| ||||| ||||| | ||| |||||||| |||||||| |||| | ||||     
T  15398316 gagaacggggagtgaatagaagagtggggtccaccgcttagaaagaagggttgtagtaaaagcaaattttgttgggagaaaagagagtatgtgacacaat 15398217  T
Q  379 aactcatcaggtaaactgctgattctgtcca 409  Q
    |||||||| ||||| | ||||||||| ||||    
T  15398216 aactcatctggtaatccgctgattctatcca 15398186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 279 - 409
Target Start/End: Complemental strand, 15410103 - 15409973
Alignment:
Q  279 gagaacagggagtgaatagcatagtgggatccaccgtttggaaagaagggtcgtagtgaaagcgagtttggttgggaggaaagagagaatgtaagacaac 378  Q
    |||||| |||||||||||| | |||||| ||||||| || ||||||||||| ||||| ||||| | ||| |||||||| |||||||| |||| | ||||     
T  15410103 gagaacggggagtgaatagaagagtggggtccaccgcttagaaagaagggttgtagtaaaagcaaattttgttgggagaaaagagagtatgtgacacaat 15410004  T
Q  379 aactcatcaggtaaactgctgattctgtcca 409  Q
    |||||||| ||||| | ||||||||| ||||    
T  15410003 aactcatctggtaatccgctgattctatcca 15409973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 217
Target Start/End: Complemental strand, 7860174 - 7860097
Alignment:
Q  140 agtttaggtgaaatgatttgaggggttggttggttgaaggacgagagagcatgagagtgtcaacaaaacgacaaaagc 217  Q
    |||||||| |||| |||||||| ||||||||||||||| || |||||| ||||| | |||| ||||||||||| ||||    
T  7860174 agtttaggcgaaacgatttgagaggttggttggttgaaagaggagagaacatgaaattgtcgacaaaacgacagaagc 7860097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 336 - 392
Target Start/End: Complemental strand, 23951671 - 23951615
Alignment:
Q  336 gaaagcgagtttggttgggaggaaagagagaatgtaagacaacaactcatcaggtaa 392  Q
    |||||| |||||||||||||| ||||||||||| | |||||||| ||||||||||||    
T  23951671 gaaagcaagtttggttgggagaaaagagagaatatgagacaacacctcatcaggtaa 23951615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 7860307 - 7860229
Alignment:
Q  13 gagatgaaactaacgggattcaatgtgtggaaacgcagactaagatgcaactcctcaacacaatgctgttttgcggctt 91  Q
    ||||||||| ||| |||||||||||| ||||||  |||| | ||||| || |||||||||  | |||||||||||||||    
T  7860307 gagatgaaaataatgggattcaatgtttggaaatacagatttagatgtaattcctcaacatgacgctgttttgcggctt 7860229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 290 - 412
Target Start/End: Complemental strand, 10415778 - 10415656
Alignment:
Q  290 gtgaatagcatagtgggatccaccgtttggaaagaagggtcgtagtgaaagcgagtttggttgggaggaaagagagaatgtaagacaacaactcatcagg 389  Q
    |||||||||| |||||| ||||||| || ||||||| || | |||| || |  ||||||| |||| | || ||||||||||||  ||| |||||||| |     
T  10415778 gtgaatagcaaagtggggtccaccgcttcgaaagaatggccatagtaaatgtcagtttggctgggggaaacgagagaatgtaaagcaataactcatctga 10415679  T
Q  390 taaactgctgattctgtccacca 412  Q
    ||||  |||||||||||| ||||    
T  10415678 taaatcgctgattctgtcaacca 10415656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 286 - 410
Target Start/End: Original strand, 19317660 - 19317784
Alignment:
Q  286 gggagtgaatagcatagtgggatccaccgtttggaaagaagggtcgtagtgaaagcgagtttggttgggaggaaagagagaatgtaagacaacaactcat 385  Q
    |||||||||||||| ||| || |||| || |||||||||| ||  ||||| ||||| ||||| |||||||| |||||||||||||||  ||| |||||||    
T  19317660 gggagtgaatagcagagttgggtccaacgcttggaaagaatggctgtagtaaaagctagttttgttgggagaaaagagagaatgtaaatcaataactcat 19317759  T
Q  386 caggtaaactgctgattctgtccac 410  Q
    | ||||||  ||| ||||| |||||    
T  19317760 ctggtaaatcgcttattctatccac 19317784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 288 - 404
Target Start/End: Original strand, 37997596 - 37997712
Alignment:
Q  288 gagtgaatagcatagtgggatccaccgtttggaaagaagggtcgtagtgaaagcgagtttggttgggaggaaagagagaatgtaagacaacaactcatca 387  Q
    ||||||| |||| ||| || ||||||| || |||||||  || ||||| |||||||||||  |||| || |||||||| |||||| |||| ||||||||     
T  37997596 gagtgaacagcagagtagggtccaccgctttgaaagaacagttgtagtaaaagcgagtttcattggtagaaaagagagtatgtaacacaataactcatct 37997695  T
Q  388 ggtaaactgctgattct 404  Q
    ||||||  |||||||||    
T  37997696 ggtaaatcgctgattct 37997712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 315 - 401
Target Start/End: Original strand, 24005974 - 24006060
Alignment:
Q  315 tttggaaagaagggtcgtagtgaaagcgagtttggttgggaggaaagagagaatgtaagacaacaactcatcaggtaaactgctgat 401  Q
    |||||| |||||||| || |||||||| ||||||||||| || ||||||||||||| | | |  ||||||||||||||  |||||||    
T  24005974 tttggagagaagggttgtggtgaaagcaagtttggttggaagaaaagagagaatgtgacaaagtaactcatcaggtaagttgctgat 24006060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0571 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 279 - 392
Target Start/End: Original strand, 411 - 524
Alignment:
Q  279 gagaacagggagtgaatagcatagtgggatccaccgtttggaaagaagggtcgtagtgaaagcgagtttggttgggaggaaagagagaatgtaagacaac 378  Q
    ||||| || |||||| | ||| ||||||||||||||||| ||||||| ||| ||||||||||||| |||| | || || ||||| || |||| | | | |    
T  411 gagaatagtgagtgagtggcaaagtgggatccaccgtttcgaaagaacggtggtagtgaaagcgattttgatgggaagaaaagaaagtatgtgacatagc 510  T
Q  379 aactcatcaggtaa 392  Q
    || |||||||||||    
T  511 aattcatcaggtaa 524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University