View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14771_high_13 (Length: 379)

Name: NF14771_high_13
Description: NF14771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14771_high_13
NF14771_high_13
[»] chr1 (1 HSPs)
chr1 (23-364)||(9700048-9700391)


Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 23 - 364
Target Start/End: Complemental strand, 9700391 - 9700048
Alignment:
Q  23 aagaatatcctaattaattgatcaacactaggtgaatatccataaaatttagctagcaatctcaatttttcttgttctcatctcctaagctaacttagga 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9700391 aagaatatcctaattaattgatcaacactaggtgaatatccataacatttagctagcaatctcaatttttcttgttctcatctcctaagctaacttagga 9700292  T
Q  123 ctaaacgtcacattgttacattatcaaacacatatcaatgcatagccataataatatatataagagcatacacataaacacctaaaccaaattaactcca 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9700291 ctaaacgtcacattgttacattatcaaacacatatcaatgcatagccataataatatatataagagcatacacataaacacctaaaccaaattaactcca 9700192  T
Q  223 aaaaccaacttgagagagtcttc--nnnnnnnnnnaccaaaatgggattagaagtccttgaggctcttgattcagctcgtacacaatggtaccatgtaac 320  Q
    |||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9700191 aaaaccaacttgagagagtcttcctttttttttttaccaaaatgggattagaagtccttgaggctcttgattcagctcgtacacaatggtaccatgtaac 9700092  T
Q  321 agctatagtcattgctggcatgggattcttcactgatgcctatg 364  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  9700091 agctatagtaattgctggcatgggattcttcactgatgcctatg 9700048  T

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