View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14771_high_18 (Length: 317)
Name: NF14771_high_18
Description: NF14771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14771_high_18 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 300
Target Start/End: Complemental strand, 5043820 - 5043541
Alignment:
| Q |
16 |
atctgtttcctgaaatgatttcattgaagaaaatagtagttgacattcataaacctgacttgatctgcaaggttggtcaatgaaaagaaagtgctttggt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5043820 |
atctgtttcctgaaatgatttcattgaagaaaatagtagttgacattcacaaacctgacttgatctgcaaggttggtcaatgaaaagaaagtgctttggt |
5043721 |
T |
|
| Q |
116 |
aattcattcactgagctagctagctgtaatatatgtaatgatggcatggggtacatgtgaattaagtagctacaaatgttatatgatttaggaatcatgc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5043720 |
aattcattcactgagctagctagctgtaatatatgtaatgatggcatggggtacatgtgaattaagtagctacaaatgttatatgatttaggaatcatgc |
5043621 |
T |
|
| Q |
216 |
aataatattgtaacaacctataaatctaaacaaaagatagataaactacaattttgatgattcatttgctaatctcactattgtc |
300 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||| |||||||||| ||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
5043620 |
aataatattgtaacaa-ctataaatttaaacaaa----agataaactaaaattttgatgattcatttgttaatctcactgttgtc |
5043541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University