View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14771_high_22 (Length: 292)

Name: NF14771_high_22
Description: NF14771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14771_high_22
NF14771_high_22
[»] chr6 (4 HSPs)
chr6 (1-277)||(30574858-30575136)
chr6 (52-103)||(29657467-29657518)
chr6 (55-103)||(1572751-1572799)
chr6 (55-103)||(1573962-1574010)
[»] chr2 (6 HSPs)
chr2 (1-179)||(19019591-19019770)
chr2 (1-176)||(3029896-3030069)
chr2 (1-179)||(4250931-4251102)
chr2 (52-103)||(4518984-4519035)
chr2 (52-103)||(44112941-44112992)
chr2 (55-96)||(44503204-44503245)
[»] chr7 (7 HSPs)
chr7 (1-178)||(40692085-40692262)
chr7 (69-147)||(41495865-41495943)
chr7 (52-103)||(15743509-15743560)
chr7 (52-113)||(12018539-12018599)
chr7 (34-74)||(40690132-40690173)
chr7 (55-103)||(29418264-29418312)
chr7 (55-103)||(15742366-15742414)
[»] scaffold0242 (4 HSPs)
scaffold0242 (1-178)||(11616-11795)
scaffold0242 (1-178)||(20451-20630)
scaffold0242 (1-178)||(7010-7189)
scaffold0242 (1-178)||(9314-9493)
[»] chr1 (12 HSPs)
chr1 (1-179)||(44611892-44612086)
chr1 (13-156)||(41642179-41642320)
chr1 (46-146)||(21899519-21899619)
chr1 (46-149)||(14642621-14642724)
chr1 (52-103)||(44031561-44031612)
chr1 (52-103)||(28876768-28876819)
chr1 (52-103)||(37811038-37811089)
chr1 (52-95)||(19620367-19620410)
chr1 (46-108)||(44872937-44872997)
chr1 (52-95)||(51837774-51837817)
chr1 (63-154)||(36283601-36283692)
chr1 (55-103)||(51836598-51836646)
[»] chr3 (11 HSPs)
chr3 (13-156)||(44211426-44211567)
chr3 (1-178)||(19316609-19316787)
chr3 (1-178)||(19319326-19319502)
chr3 (33-156)||(54358973-54359096)
chr3 (33-156)||(54361215-54361338)
chr3 (52-103)||(30574624-30574675)
chr3 (52-103)||(6530076-6530127)
chr3 (52-102)||(30575786-30575836)
chr3 (52-103)||(6528987-6529038)
chr3 (52-103)||(43679039-43679090)
chr3 (33-105)||(41513452-41513525)
[»] chr5 (6 HSPs)
chr5 (46-149)||(41574177-41574279)
chr5 (13-154)||(15480848-15480989)
chr5 (33-156)||(14248504-14248627)
chr5 (34-96)||(27439060-27439123)
chr5 (52-96)||(41422468-41422512)
chr5 (55-103)||(14672527-14672575)
[»] chr8 (6 HSPs)
chr8 (1-146)||(30955132-30955276)
chr8 (1-146)||(30957785-30957929)
chr8 (81-146)||(40984866-40984931)
chr8 (46-93)||(36824584-36824631)
chr8 (35-74)||(40985187-40985227)
chr8 (59-101)||(31310193-31310235)
[»] chr4 (7 HSPs)
chr4 (46-105)||(42819454-42819513)
chr4 (118-158)||(26855797-26855837)
chr4 (52-96)||(30101580-30101624)
chr4 (55-103)||(56331997-56332045)
chr4 (52-103)||(30100435-30100486)
chr4 (33-92)||(26855851-26855911)
chr4 (55-103)||(48367677-48367725)
[»] scaffold0167 (1 HSPs)
scaffold0167 (34-106)||(24871-24943)


Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 30575136 - 30574858
Alignment:
Q  1 agagtgagggttatctttgatcattttgttcggttagaaaccttaggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggtta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  30575136 agagtgagggttatctttgatcattttgttcggttagaaaccttaggtttaggcagagagagaaatgtctcttctctgaggagcttttgctctggggtta 30575037  T
Q  101 caggggttttcttctagaatacatttatttttaattcaataatacagtttatttc--tgtgtgaaatcgggtctctatcagttctcaggatattttgctg 198  Q
    |||||||||||||||| ||||||| |||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||    
T  30575036 caggggttttcttctacaatacatctattttcaattcaataatacagtttatttctttgtgtgaaatcgggtctctatcagttctcagtatattttgctg 30574937  T
Q  199 caggtgtttgttccttttgtctctattgcagatgctgatacatctgttgatgcatgctgttggtgtattgcgtcctttg 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30574936 caggtgtttgttccttttgtctctattgcagatgctgatacatctgttgatgcatgctgttggtgtattgcgtcctttg 30574858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 103
Target Start/End: Original strand, 29657467 - 29657518
Alignment:
Q  52 ggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacag 103  Q
    |||||||||||| |||||||||| |||| ||||||||||| |||| ||||||    
T  29657467 ggcagagagagagatgtctcttctctgaggagcttttgctttgggattacag 29657518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 1572799 - 1572751
Alignment:
Q  55 agagagagaaatgtctcttcactgaagagcttttgctctggggttacag 103  Q
    ||||||||  |||||||||| |||| |||||||||||||||| ||||||    
T  1572799 agagagagtgatgtctcttctctgaggagcttttgctctgggattacag 1572751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 1574010 - 1573962
Alignment:
Q  55 agagagagaaatgtctcttcactgaagagcttttgctctggggttacag 103  Q
    ||||||||  |||||||||| |||| |||||||||||||||| ||||||    
T  1574010 agagagagtgatgtctcttctctgaggagcttttgctctgggattacag 1573962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 124; Significance: 8e-64; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 19019770 - 19019591
Alignment:
Q  1 agagtgagggttatctttgatcattttgttcggttagaaaccttagg-tttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggtt 99  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| | ||||||||| |||||||    
T  19019770 agagtgaggattatctttgatcattttgttcggttagaaaccttagggtttaggcagagagagaaatgtctcttctctgaggggcttttgctatggggtt 19019671  T
Q  100 acaggggttttcttctagaatacatttatttttaattcaataatacagtttatttctgtgtgaaatcgggtctctatcag 179  Q
    ||||||| | ||||||  ||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  19019670 acagggggtctcttctgtaatacatctattgtcaattcaataatacagtttatttctgtgtgaaatcgggtctctatcag 19019591  T

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Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 3030069 - 3029896
Alignment:
Q  1 agagtgagggttatctttgatcattttgttcggttagaaaccttagg-tttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggtt 99  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||  |||| ||||||||||| |||||||    
T  3030069 agagtgagggatatctttgatcattttgttcagttagaaaccttagggtttaggcagagagagaaatgtctcttatctgaggagcttttgctatggggtt 3029970  T
Q  100 acaggggttttcttctagaatacatttatttttaattcaataatacagtttatttctgtgtgaaatcgggtctctat 176  Q
    ||||||||||||||||  ||||||| |||||| |||||   ||||||||||||||||||||||||||||||||||||    
T  3029969 acaggggttttcttctgtaatacatctattttcaattc---aatacagtttatttctgtgtgaaatcgggtctctat 3029896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 4250931 - 4251102
Alignment:
Q  1 agagtgagggttatctttgatcattttgttcggttagaaacctta-ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggtt 99  Q
    ||||||||| ||||||| ||||||||||||| ||||| ||||||| ||||| ||||||||||| ||||||||||| |||| ||| |||||||            
T  4250931 agagtgaggattatcttggatcattttgttcagttag-aaccttagggtttgggcagagagaggaatgtctcttctctgaggagtttttgct-------- 4251021  T
Q  100 acaggggttttcttctagaatacatttatttttaattcaataatacagtttatt--tctgtgtgaaatcgggtctctatcag 179  Q
     |||||||| ||||||  ||||||| ||||||  ||||||||||||| ||||||  ||||||| || |||||| ||||||||    
T  4251022 -caggggttatcttctgtaatacatctattttccattcaataatacaatttatttgtctgtgttaattcgggtttctatcag 4251102  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 103
Target Start/End: Original strand, 4518984 - 4519035
Alignment:
Q  52 ggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacag 103  Q
    ||||||||||||||||||||||| |||| |||||||||||||||| ||||||    
T  4518984 ggcagagagagaaatgtctcttctctgaggagcttttgctctgggattacag 4519035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 103
Target Start/End: Complemental strand, 44112992 - 44112941
Alignment:
Q  52 ggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacag 103  Q
    ||||||||||||||||||||||| |||| ||||| |||||||||| ||||||    
T  44112992 ggcagagagagaaatgtctcttctctgaggagctgttgctctgggattacag 44112941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 96
Target Start/End: Original strand, 44503204 - 44503245
Alignment:
Q  55 agagagagaaatgtctcttcactgaagagcttttgctctggg 96  Q
    ||||||||| |||||||||| |||||||||||||||||||||    
T  44503204 agagagagagatgtctcttctctgaagagcttttgctctggg 44503245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 119; Significance: 8e-61; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 40692085 - 40692262
Alignment:
Q  1 agagtgagggttatctttgatcattttgttcggttagaaaccttagg-tttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggtt 99  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||     
T  40692085 agagtgaggattatctttgatcattttgttcggttagaaaccttagggtttaggcagagagagaaatgtctcttctctgaggagcttttgctctggggt- 40692183  T
Q  100 acaggggttttcttctagaatacatttatttttaattcaataatacagtttatttctgtgtgaaatcgggtctctatca 178  Q
    ||||||||||||||||  ||||||| |||||| |||||||||||||| ||||||||||||| || |||||| |||||||    
T  40692184 acaggggttttcttctgtaatacatctattttcaattcaataatacaatttatttctgtgttaattcgggtttctatca 40692262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 147
Target Start/End: Original strand, 41495865 - 41495943
Alignment:
Q  69 ctcttcactgaagagcttttgctctggggttacaggggttttcttctagaatacatttatttttaattcaataatacag 147  Q
    |||||| |||| |||||||||||||||||||||||||||| ||||||  ||||||| |||||  ||||||| |||||||    
T  41495865 ctcttctctgaggagcttttgctctggggttacaggggttatcttctgtaatacatctatttccaattcaacaatacag 41495943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 103
Target Start/End: Original strand, 15743509 - 15743560
Alignment:
Q  52 ggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacag 103  Q
    |||||||||||| |||||||||| |||| |||||||||||||||| ||||||    
T  15743509 ggcagagagagagatgtctcttctctgaggagcttttgctctgggattacag 15743560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 113
Target Start/End: Complemental strand, 12018599 - 12018539
Alignment:
Q  52 ggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggggttttctt 113  Q
    ||||||||||||||| ||||||  |||| ||||||||||||| |||||||||| ||||||||    
T  12018599 ggcagagagagaaatatctcttatctgaggagcttttgctct-gggttacaggagttttctt 12018539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 40690132 - 40690173
Alignment:
Q  34 ttagaaaccttagg-tttaggcagagagagaaatgtctcttc 74  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  40690132 ttagaaaccttagggtttaggcagagagagaaatgtctcttc 40690173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 29418312 - 29418264
Alignment:
Q  55 agagagagaaatgtctcttcactgaagagcttttgctctggggttacag 103  Q
    |||||||||||||||||||| |||| ||||||||||||| || ||||||    
T  29418312 agagagagaaatgtctcttctctgaggagcttttgctctaggattacag 29418264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 15742366 - 15742414
Alignment:
Q  55 agagagagaaatgtctcttcactgaagagcttttgctctggggttacag 103  Q
    ||||||||  |||||||||| |||| |||||||||||||||| ||||||    
T  15742366 agagagagtgatgtctcttctctgaggagcttttgctctgggattacag 15742414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242 (Bit Score: 91; Significance: 4e-44; HSPs: 4)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 11616 - 11795
Alignment:
Q  1 agagtgagggttatctttgatcattttgttcggttagaaaccttagg-tttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggtt 99  Q
    ||||||||| |||||||||||||||| |||| ||||  ||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||| |||||    
T  11616 agagtgaggattatctttgatcattt-gttcagttaataaccttagggtttaggcagagagagaaatgtctcttctctgaggagcttttgctct-gggtt 11713  T
Q  100 aca-ggggttttcttctagaatacatttatttttaattcaataatacagtttatttc--tgtgtgaaatcgggtctctatca 178  Q
    ||| |||||||||||||  ||||||| |||||| |||| |||||||| |||||||||  |||||||||||||||||||||||    
T  11714 acagggggttttcttctgtaatacatctattttcaatttaataatactgtttatttctttgtgtgaaatcgggtctctatca 11795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 20451 - 20630
Alignment:
Q  1 agagtgagggttatctttgatcattttgttcggttagaaaccttagg-tttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggtt 99  Q
    ||||||||| |||||||||||||||| |||| ||||  ||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||| |||||    
T  20451 agagtgaggattatctttgatcattt-gttcagttaataaccttagggtttaggcagagagagaaatgtctcttctctgaggagcttttgctct-gggtt 20548  T
Q  100 aca-ggggttttcttctagaatacatttatttttaattcaataatacagtttatttc--tgtgtgaaatcgggtctctatca 178  Q
    ||| |||||||||||||  ||||||| |||||| |||| |||||||| |||||||||  |||||||||||||||||||||||    
T  20549 acagggggttttcttctgtaatacatctattttcaatttaataatactgtttatttctttgtgtgaaatcgggtctctatca 20630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 7010 - 7189
Alignment:
Q  1 agagtgagggttatctttgatcattttgttcggttagaaaccttagg-tttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggtt 99  Q
    ||||||||| |||||||||||||||| |||| ||||  ||||||||| ||| ||||||||||||||||||| ||| |||| ||||||||||||| |||||    
T  7010 agagtgaggattatctttgatcattt-gttcagttaataaccttagggtttgggcagagagagaaatgtcttttctctgaggagcttttgctct-gggtt 7107  T
Q  100 aca-ggggttttcttctagaatacatttatttttaattcaataatacagtttatttc--tgtgtgaaatcgggtctctatca 178  Q
    ||| |||||||||||||  ||||||| |||||| |||| || ||||| |||||||||  |||||||||| ||||||||||||    
T  7108 acagggggttttcttctgtaatacatctattttcaatttaaaaatactgtttatttctttgtgtgaaattgggtctctatca 7189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 9314 - 9493
Alignment:
Q  1 agagtgagggttatctttgatcattttgttcggttagaaaccttagg-tttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggtt 99  Q
    ||||||||| |||||||||||||||| |||| ||||  ||||||||| ||| ||||||||||||||||||| ||| |||| ||||||||||||| |||||    
T  9314 agagtgaggattatctttgatcattt-gttcagttaataaccttagggtttgggcagagagagaaatgtcttttctctgaggagcttttgctct-gggtt 9411  T
Q  100 aca-ggggttttcttctagaatacatttatttttaattcaataatacagtttatttc--tgtgtgaaatcgggtctctatca 178  Q
    ||| |||||||||||||  ||||||| |||||| |||| || ||||| |||||||||  |||||||||| ||||||||||||    
T  9412 acagggggttttcttctgtaatacatctattttcaatttaaaaatactgtttatttctttgtgtgaaattgggtctctatca 9493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 6e-40; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 44611892 - 44612086
Alignment:
Q  1 agagtgagggttatctttgatcattttgttcggttagaaaccttagg-tttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggtt 99  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||| | |||||||||  ||||||    
T  44611892 agagtgaggattatctttgatcattttgttcagttagaaaccttagggtttaggcagagagagaaatgtctcttctctgaggggcttttgctacggggtt 44611991  T
Q  100 acaggggtttt-------------cttctagaatacatttatttttaattcaataatacagtttatttc--tgtgtgaaatcgggtctctatcag 179  Q
    |||||||||||             |||||  ||||||| |||| | |||||||||||||||||||||||  ||||||||||||||||||||||||    
T  44611992 acaggggttttcttctgtaatacacttctgtaatacatctattgtcaattcaataatacagtttatttctttgtgtgaaatcgggtctctatcag 44612086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 13 - 156
Target Start/End: Original strand, 41642179 - 41642320
Alignment:
Q  13 atctttgatcattttgttcggttagaaacctta-ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggggttttc 111  Q
    |||||||||||||||||||  | || ||||||| ||||||||||||||||||||||||||||| |||| |||||| |||||| |||||||| ||  | ||    
T  41642179 atctttgatcattttgttc-atcag-aaccttagggtttaggcagagagagaaatgtctcttctctgaggagcttctgctctagggttaca-ggactatc 41642275  T
Q  112 ttctagaatacatttatttttaattcaataatacagtttatttct 156  Q
    ||||  ||||||| |||||| |||||||||||||| |||||||||    
T  41642276 ttctgtaatacatctattttcaattcaataatacaatttatttct 41642320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 146
Target Start/End: Original strand, 21899519 - 21899619
Alignment:
Q  46 ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggggttttcttctagaatacatttatttttaattcaataatac 145  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||| | || ||||||  |||||||  ||||| ||||||||| |||    
T  21899519 ggtttaggcagagagagaaatgtctcttctctgaggagcttttgctctagggttacagagattatcttctgtaatacatcaattttcaattcaatagtac 21899618  T
Q  146 a 146  Q
    |    
T  21899619 a 21899619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 46 - 149
Target Start/End: Original strand, 14642621 - 14642724
Alignment:
Q  46 ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggggttttcttctagaatacatttatttttaattcaataatac 145  Q
    ||||||||| ||||||||||| | |||||  ||| |||||||||||||||||| ||| ||||| ||||||   |||||| |||||| |||||||||||||    
T  14642621 ggtttaggcggagagagaaatatttcttctttgaggagcttttgctctggggtaacaagggttatcttctgatatacatctattttcaattcaataatac 14642720  T
Q  146 agtt 149  Q
    ||||    
T  14642721 agtt 14642724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 103
Target Start/End: Complemental strand, 44031612 - 44031561
Alignment:
Q  52 ggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacag 103  Q
    ||||||||||||||||||||||| |||| |||||||||||||||| ||||||    
T  44031612 ggcagagagagaaatgtctcttctctgaggagcttttgctctgggattacag 44031561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 103
Target Start/End: Original strand, 28876768 - 28876819
Alignment:
Q  52 ggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacag 103  Q
    |||||||||||| |||||||||| |||| |||||||||||||||| ||||||    
T  28876768 ggcagagagagagatgtctcttctctgaggagcttttgctctgggattacag 28876819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 103
Target Start/End: Original strand, 37811038 - 37811089
Alignment:
Q  52 ggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacag 103  Q
    |||||||| |||||||||||||| |||| |||||||||||||||| ||||||    
T  37811038 ggcagagacagaaatgtctcttctctgaggagcttttgctctgggattacag 37811089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 95
Target Start/End: Complemental strand, 19620410 - 19620367
Alignment:
Q  52 ggcagagagagaaatgtctcttcactgaagagcttttgctctgg 95  Q
    ||||||||||||||||||||||| |||| ||||| |||||||||    
T  19620410 ggcagagagagaaatgtctcttctctgaggagctcttgctctgg 19620367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 44872997 - 44872937
Alignment:
Q  46 ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggggtt 108  Q
    ||||| |||||||||| |||||||||||| | ||||  ||||||||||||| |||||||||||    
T  44872997 ggtttgggcagagagaaaaatgtctcttctcagaag--cttttgctctgggattacaggggtt 44872937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 95
Target Start/End: Original strand, 51837774 - 51837817
Alignment:
Q  52 ggcagagagagaaatgtctcttcactgaagagcttttgctctgg 95  Q
    |||||||||||| |||||||||| |||| |||||||||||||||    
T  51837774 ggcagagagagagatgtctcttctctgaggagcttttgctctgg 51837817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 154
Target Start/End: Complemental strand, 36283692 - 36283601
Alignment:
Q  63 aaatgtctcttcactgaagagcttttgctctggggttaca-ggggttttcttctagaatacatttatttttaattcaataatacagtttattt 154  Q
    |||||||||||  |||| ||||||||||| ||||||||||  ||| || |||||  |||| || |||||| || |||||||||||||||||||    
T  36283692 aaatgtctcttttctgaggagcttttgctatggggttacattggggttccttctgtaatatatctattttcaa-tcaataatacagtttattt 36283601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 51836598 - 51836646
Alignment:
Q  55 agagagagaaatgtctcttcactgaagagcttttgctctggggttacag 103  Q
    ||||||||  |||||||||| |||| |||||||||||||||| ||||||    
T  51836598 agagagagtgatgtctcttctctgaggagcttttgctctgggattacag 51836646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 156
Target Start/End: Original strand, 44211426 - 44211567
Alignment:
Q  13 atctttgatcattttgttcggttagaaaccttaggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggggttttct 112  Q
    ||||||||||||||||||| ||||||| ||||||| || ||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||| |||    
T  44211426 atctttgatcattttgttcagttagaa-ccttagggttgggcagagagagaaatgtctcttctctgaggagcttttgctct-gggttacaggggttatct 44211523  T
Q  113 tctagaatacatttatttttaattcaataatacagtttatttct 156  Q
    |||  || |||| |||||| |||||||||||||| |||||||||    
T  44211524 tctgtaacacatctattttcaattcaataatacaatttatttct 44211567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 19316609 - 19316787
Alignment:
Q  1 agagtgagggttatcttt-gatcattttgttcggttagaaaccttagg-tttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggt 98  Q
    |||||||||||||||||| |||||||| |||| ||||||| ||||||| ||| ||||||||||||||||||||||| |||| ||||||||||||| ||||    
T  19316609 agagtgagggttatcttttgatcattt-gttcagttagaa-ccttagggtttgggcagagagagaaatgtctcttctctgaggagcttttgctct-gggt 19316705  T
Q  99 tacaggggttttcttctagaatacatttatttttaattcaataatacagtttatt--tctgtgtgaaatcgggtctctatca 178  Q
    |||||||||| ||||||  |||||||  ||||| || |||| ||| |||||||||  |||||||||||| ||||||||||||    
T  19316706 tacaggggttatcttctgtaatacatcaattttcaactcaagaatgcagtttatttctctgtgtgaaattgggtctctatca 19316787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 19319326 - 19319502
Alignment:
Q  1 agagtgagggttatctttgatcattttgttcggttagaaacctta-ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggtt 99  Q
    ||||||||| ||||||||||||||||| ||   |||  ||||||| ||||| |||  |||||||||||||||||| |||| ||||||||||||| |||||    
T  19319326 agagtgaggtttatctttgatcatttttttttttta-taaccttagggtttgggc--agagagaaatgtctcttctctgaggagcttttgctct-gggtt 19319421  T
Q  100 acaggggttttcttctagaatacatttatttttaattcaataatacagtttatttc--tgtgtgaaatcgggtctctatca 178  Q
    ||||||||| ||||||  |||||||  ||||| || |||||||| |||||||||||  |||||||||| ||||||||||||    
T  19319422 acaggggttatcttctgtaatacatcaattttcaactcaataatgcagtttatttctttgtgtgaaattgggtctctatca 19319502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 156
Target Start/End: Original strand, 54358973 - 54359096
Alignment:
Q  33 gttagaaacctta-ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggggttttcttctagaatacatttatttt 131  Q
    ||||| ||||||| ||||||||||||||||||||  ||||||| |||| |||||| |||||| |||||||| || || ||||||  ||||||| ||||||    
T  54358973 gttaggaaccttatggtttaggcagagagagaaacatctcttctctgaggagcttctgctctagggttaca-ggattatcttctgtaatacatctatttt 54359071  T
Q  132 taattcaataatacagtttatttct 156  Q
     |||||||||||||| |||||||||    
T  54359072 caattcaataatacaatttatttct 54359096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 156
Target Start/End: Original strand, 54361215 - 54361338
Alignment:
Q  33 gttagaaacctta-ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggggttttcttctagaatacatttatttt 131  Q
    ||||| ||||||| ||||||||||||||||||||  ||||||| |||| |||||| |||||| |||||||| || || ||||||  ||||||| ||||||    
T  54361215 gttaggaaccttatggtttaggcagagagagaaacatctcttctctgaggagcttctgctctagggttaca-ggattatcttctgtaatacatctatttt 54361313  T
Q  132 taattcaataatacagtttatttct 156  Q
     |||||||||||||| |||||||||    
T  54361314 caattcaataatacaatttatttct 54361338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 103
Target Start/End: Complemental strand, 30574675 - 30574624
Alignment:
Q  52 ggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacag 103  Q
    ||||||||||||||||||||||| |||| |||||||||||||||| ||||||    
T  30574675 ggcagagagagaaatgtctcttctctgaggagcttttgctctgggattacag 30574624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 103
Target Start/End: Complemental strand, 6530127 - 6530076
Alignment:
Q  52 ggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacag 103  Q
    |||||| |||||||||||||||| |||| |||||||||||||||| ||||||    
T  6530127 ggcagaaagagaaatgtctcttctctgaggagcttttgctctgggattacag 6530076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 30575836 - 30575786
Alignment:
Q  52 ggcagagagagaaatgtctcttcactgaagagcttttgctctggggttaca 102  Q
    ||||||||||||||||||||||| |||| ||||||||||| |||| |||||    
T  30575836 ggcagagagagaaatgtctcttctctgaggagcttttgctttgggattaca 30575786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 103
Target Start/End: Complemental strand, 6529038 - 6528987
Alignment:
Q  52 ggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacag 103  Q
    |||||| ||||||||||||||||  ||| |||||||||||||||| ||||||    
T  6529038 ggcagaaagagaaatgtctcttctttgaggagcttttgctctgggattacag 6528987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 103
Target Start/End: Original strand, 43679039 - 43679090
Alignment:
Q  52 ggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacag 103  Q
    ||||||||||||||||||||||| |||| |||| |||||||| || ||||||    
T  43679039 ggcagagagagaaatgtctcttctctgaggagcgtttgctctaggattacag 43679090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 105
Target Start/End: Complemental strand, 41513525 - 41513452
Alignment:
Q  33 gttagaaacctta-ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggg 105  Q
    |||||||||| || ||||| ||||||||||||||||| ||||| || | ||||| |||||||||| ||| ||||    
T  41513525 gttagaaaccgtatggtttgggcagagagagaaatgtttcttctctaaggagctcttgctctgggattataggg 41513452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 46 - 149
Target Start/End: Complemental strand, 41574279 - 41574177
Alignment:
Q  46 ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggggttttcttctagaatacatttatttttaattcaataatac 145  Q
    ||||||||||||  ||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||  |||||||||||||| |||||||||||||    
T  41574279 ggtttaggcagat-gagaaatgtctcttctctgaggagcttttgctctggggttacaggggttatcttctgtaatacatttattttcaattcaataatac 41574181  T
Q  146 agtt 149  Q
    ||||    
T  41574180 agtt 41574177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 13 - 154
Target Start/End: Complemental strand, 15480989 - 15480848
Alignment:
Q  13 atctttgatcattttgttcggttagaaaccttagg-tttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggggttttc 111  Q
    ||||||||||||||||||| ||||||| ||||||| ||| ||| ||||||| |||||||||||  ||| ||| |||||||| ||||||||||||||| ||    
T  15480989 atctttgatcattttgttcagttagaa-ccttagggtttgggccgagagaggaatgtctcttctatgaggagtttttgctcaggggttacaggggttatc 15480891  T
Q  112 ttctagaatacatttatttttaattcaataatacagtttattt 154  Q
    ||||  ||||||| |||||| |||||||||||||| |||||||    
T  15480890 ttctgtaatacatctattttcaattcaataatacaatttattt 15480848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 33 - 156
Target Start/End: Complemental strand, 14248627 - 14248504
Alignment:
Q  33 gttagaaacctta-ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggggttttcttctagaatacatttatttt 131  Q
    ||||| ||||||| ||||||||||||||||||||  ||||||| |||| |||||| |||||| |||||||| || || ||||||  ||||||| ||||||    
T  14248627 gttaggaaccttatggtttaggcagagagagaaacatctcttctctgaggagcttctgctctagggttaca-ggattatcttctgtaatacatctatttt 14248529  T
Q  132 taattcaataatacagtttatttct 156  Q
     |||||||||||||| ||| |||||    
T  14248528 caattcaataatacaatttctttct 14248504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 27439123 - 27439060
Alignment:
Q  34 ttagaaacctta-ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggg 96  Q
    |||| ||||||| ||||||||||||||||||||| ||||||| |||| |||||| |||||||||    
T  27439123 ttaggaaccttatggtttaggcagagagagaaatatctcttctctgaggagcttatgctctggg 27439060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 41422468 - 41422512
Alignment:
Q  52 ggcagagagagaaatgtctcttcactgaagagcttttgctctggg 96  Q
    |||||||||||| |||||||||| |||| ||||||||||||||||    
T  41422468 ggcagagagagagatgtctcttctctgaggagcttttgctctggg 41422512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 14672527 - 14672575
Alignment:
Q  55 agagagagaaatgtctcttcactgaagagcttttgctctggggttacag 103  Q
    ||||||||| |||||||||| |||| ||||||||||| |||| ||||||    
T  14672527 agagagagagatgtctcttctctgaggagcttttgctttgggattacag 14672575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 30955276 - 30955132
Alignment:
Q  1 agagtgagggttatctttgatcattttgttcggttagaaacctta-ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggtt 99  Q
    ||||||||| |||||||||||||||||||||  | || ||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||| |||||    
T  30955276 agagtgaggattatctttgatcattttgttc-atcag-aaccttagggtttaggcagagagagaaatgtctcttctctgaggagcttttgctctagggtt 30955179  T
Q  100 acaggggttttcttctagaatacatttatttttaattcaataataca 146  Q
    |||| | || ||||||  |||||||  ||||| ||||||||| ||||    
T  30955178 acagagattatcttctgtaatacatcaattttcaattcaatagtaca 30955132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 30957929 - 30957785
Alignment:
Q  1 agagtgagggttatctttgatcattttgttcggttagaaacctta-ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggtt 99  Q
    ||||||||| |||||||||||||||||||||  | || ||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||| |||||    
T  30957929 agagtgaggattatctttgatcattttgttc-atcag-aaccttagggtttaggcagagagagaaatgtctcttctctgaggagcttttgctctagggtt 30957832  T
Q  100 acaggggttttcttctagaatacatttatttttaattcaataataca 146  Q
    |||| | || ||||||  |||||||  ||||| ||||||||| ||||    
T  30957831 acagagattatcttctgtaatacatcaattttcaattcaatagtaca 30957785  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 146
Target Start/End: Complemental strand, 40984931 - 40984866
Alignment:
Q  81 gagcttttgctctggggttacaggggttttcttctagaatacatttatttttaattcaataataca 146  Q
    ||||||||||| |||||||||||||||| | ||||  ||||||| |||||| ||||||||||||||    
T  40984931 gagcttttgctatggggttacaggggttattttctgtaatacatctattttcaattcaataataca 40984866  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 93
Target Start/End: Original strand, 36824584 - 36824631
Alignment:
Q  46 ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctct 93  Q
    ||||||||||||||||||||||||||||| |||| |||||| ||||||    
T  36824584 ggtttaggcagagagagaaatgtctcttctctgaggagcttatgctct 36824631  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 74
Target Start/End: Complemental strand, 40985227 - 40985187
Alignment:
Q  35 tagaaaccttagg-tttaggcagagagagaaatgtctcttc 74  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  40985227 tagaaaccttagggtttaggcagagagagaaatgtctcttc 40985187  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 101
Target Start/End: Complemental strand, 31310235 - 31310193
Alignment:
Q  59 agagaaatgtctcttcactgaagagcttttgctctggggttac 101  Q
    ||||||||| |||||| || |||||||||||||||||||||||    
T  31310235 agagaaatgcctcttccctcaagagcttttgctctggggttac 31310193  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 42819454 - 42819513
Alignment:
Q  46 ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacaggg 105  Q
    ||||||||| ||||||||||||||||||| |||| ||||| |||||||||| ||| ||||    
T  42819454 ggtttaggctgagagagaaatgtctcttctctgaggagctcttgctctgggattataggg 42819513  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 158
Target Start/End: Complemental strand, 26855837 - 26855797
Alignment:
Q  118 aatacatttatttttaattcaataatacagtttatttctgt 158  Q
    ||||||| |||||| ||||||||||||||||||||||||||    
T  26855837 aatacatatattttcaattcaataatacagtttatttctgt 26855797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 30101580 - 30101624
Alignment:
Q  52 ggcagagagagaaatgtctcttcactgaagagcttttgctctggg 96  Q
    |||||||||||| |||||||||| |||| ||||||||||||||||    
T  30101580 ggcagagagagagatgtctcttctctgaggagcttttgctctggg 30101624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 56331997 - 56332045
Alignment:
Q  55 agagagagaaatgtctcttcactgaagagcttttgctctggggttacag 103  Q
    |||||||||||||||||||| |||| ||||||||||||| || ||||||    
T  56331997 agagagagaaatgtctcttctctgaggagcttttgctctaggattacag 56332045  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 103
Target Start/End: Original strand, 30100435 - 30100486
Alignment:
Q  52 ggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacag 103  Q
    |||||||||||| |||||||||| |||| ||||||||||| |||| ||||||    
T  30100435 ggcagagagagagatgtctcttctctgaggagcttttgctttgggattacag 30100486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 26855911 - 26855851
Alignment:
Q  33 gttagaaacctta-ggtttaggcagagagagaaatgtctcttcactgaagagcttttgctc 92  Q
    ||||||||||||  ||||| |||||||| ||||| |||||||| |||| ||||||||||||    
T  26855911 gttagaaaccttctggtttgggcagagatagaaacgtctcttctctgaggagcttttgctc 26855851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 48367677 - 48367725
Alignment:
Q  55 agagagagaaatgtctcttcactgaagagcttttgctctggggttacag 103  Q
    ||||||||  |||||||||| |||| |||||||||||||||| ||||||    
T  48367677 agagagagtgatgtctcttctctgaggagcttttgctctgggattacag 48367725  T

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Target: scaffold0167 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 106
Target Start/End: Complemental strand, 24943 - 24871
Alignment:
Q  34 ttagaaaccttaggtttaggcagagagagaaatgtctcttcactgaagagcttttgctctggggttacagggg 106  Q
    |||||||||||| | || ||||||||||||||| |||||||  ||| |||||| |||| |||| |||||||||    
T  24943 ttagaaaccttatggtttggcagagagagaaatatctcttctttgaggagcttctgctttgggcttacagggg 24871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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