View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14771_high_30 (Length: 238)
Name: NF14771_high_30
Description: NF14771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14771_high_30 |
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Alignment Details
Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 35604170 - 35603966
Alignment:
| Q |
18 |
ataaaagatttctctattttcctctatatttttcatccccagaaaaattc--tccttcattccctccaaacttcaaaacaaacctaaatgtcttcttatt |
115 |
Q |
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| T |
35604170 |
ataaaagatttctctattttcctctgtatttttcatccccaaaaaaaattaatccttcattccctccaaacttcaaaacaaacctaaatctctt---att |
35604074 |
T |
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| Q |
116 |
tagaattttgtgagccttaagccttagtctgacttgcagtt-nnnnnnnngttggctggcaaaatccaatgttgaaaatgaaatcattacttattgtatc |
214 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35604073 |
tagaattttgtgagccttaagccttagtctaacttgcagttaaaaaaaaagttggttggcaaaatccaatgttgaaaatgaaatcattacttattgtatc |
35603974 |
T |
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| Q |
215 |
aacatatt |
222 |
Q |
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|||||||| |
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| T |
35603973 |
aacatatt |
35603966 |
T |
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