View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14771_high_5 (Length: 529)
Name: NF14771_high_5
Description: NF14771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14771_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 11 - 513
Target Start/End: Complemental strand, 39897633 - 39897133
Alignment:
| Q |
11 |
gcaaagggaagtaagctctggcgtgtagtcccagtcatgtcccgtcaagtccaaattcagaacattacctgcagctgtcaaagatttgaaacaataaata |
110 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39897633 |
gcaaagggaagtaagctctggcgtatagtcccagtcatgtcccgtcaagtccaaattcagaacattacctgcagctgtcaaagatttgaaacaataaata |
39897534 |
T |
|
| Q |
111 |
tcggaacttcaaaatatattttaacaaactagattcaaataggttctacaactactcactgtcctctggaagataatccattctttgtnnnnnnnnntga |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
39897533 |
tcggaacttcaaaatatattttaacaaactagattcaaataggttctacaactactcactgtcct--ggaagataatccattctttgtaaaaaaaaatga |
39897436 |
T |
|
| Q |
211 |
ggttgaaccaggagtattcttctagctaaaattagttgcttgcactataatattatactattggcaagctggagtataagtaaccatagatcatatttat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39897435 |
ggttgaaccaggagtattcttctagctaaaattagttgcttgcactataatattatactattggcaagctggagtataagtaaccatagatcatatttat |
39897336 |
T |
|
| Q |
311 |
taatcctagacatagcacaatgtccatgattctattacctttttatgtcagattaaacaattctacatatgaatgaatgcttgaccttttctttttaaaa |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
39897335 |
taatcctagacatagcacaatgtccatgattctattacttttttatgtcagattaaacaattctatatatgaatgaatgcttgaccttttctttttaaaa |
39897236 |
T |
|
| Q |
411 |
caaattcttcgaagatcaatttatactagtatatgaataaatactcaannnnnnnnataaaagttcctcgaaggtcggatgggtgcggagtaaaagagct |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39897235 |
caaattcttcgaagatcaatttatactagtatatgaataaatactcaattttttttataaaagttcctcgaaggtcggatgggtgcggagtaaaagagct |
39897136 |
T |
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| Q |
511 |
ctc |
513 |
Q |
| |
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||| |
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| T |
39897135 |
ctc |
39897133 |
T |
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