View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14771_low_12 (Length: 399)
Name: NF14771_low_12
Description: NF14771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14771_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 20 - 380
Target Start/End: Complemental strand, 9112166 - 9111809
Alignment:
| Q |
20 |
cggtatcaggtgctggtgccggagccaacgagggactgaggtcttgagccgaggctacattgacggctaagacgacaacaaaaaagaagaaaagaatctt |
119 |
Q |
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| T |
9112166 |
cggtatcaggtgctggtgccggagccaacgagggactgaggtcttgggccgagactacattgacggctaagacgacaacaaaaaggaaggaaaggatctt |
9112067 |
T |
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| Q |
120 |
cattgtggtagctgatgatgccattgcgaaaatgttaaatacagaaagtgaaactgaatatagagaagttgtgcgagttgtgtatgttgttgaatgcaag |
219 |
Q |
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| T |
9112066 |
cattgtggtagccgatgatgccattgcgaaattgtcaaatagagaaagtgaaactgaatatagagaagttgtgcaagttgtgtatgttg---aatgcaag |
9111970 |
T |
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| Q |
220 |
atattgagaattgaaagggtatgggaaaatttataagagaagaatcatttgcagaagcacgtgagcatacagaaaatatggacaggtggagcttgagaaa |
319 |
Q |
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| T |
9111969 |
atattgagaattgaaagggtatgggaaaatatataagagaagaatcatttgcagaagcacgtgagcatacagaaaatatggacaggtggagcttgagaaa |
9111870 |
T |
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| Q |
320 |
caataatgccaacattgtacaattgtctcatatatgccgacgttgtatcatatatgccgac |
380 |
Q |
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| T |
9111869 |
caataatgccaacattgtacaattgtctcatatatgccgacgttgtatcatatatgccgac |
9111809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 32 - 71
Target Start/End: Complemental strand, 8755628 - 8755589
Alignment:
| Q |
32 |
ctggtgccggagccaacgagggactgaggtcttgagccga |
71 |
Q |
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| T |
8755628 |
ctggtgccggagccaacgagggactgaggtcttgagccga |
8755589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 32 - 145
Target Start/End: Complemental strand, 9019335 - 9019225
Alignment:
| Q |
32 |
ctggtgccggagccaacgagggactgaggtcttgagccgaggctacattgacggctaagacgacaacaaaaaagaa-gaaaagaatcttcattgtggtag |
130 |
Q |
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| T |
9019335 |
ctggtgccggagcggatgagggactaaggtcttgagccgaggccaca---acagccacaaagacaacaaaaaagaaagagaagaa-cttcattgtagtag |
9019240 |
T |
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| Q |
131 |
ctgatgatgccattg |
145 |
Q |
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| T |
9019239 |
ctgatgatgccattg |
9019225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 146
Target Start/End: Complemental strand, 9015470 - 9015356
Alignment:
| Q |
32 |
ctggtgccggagccaacgagggactgaggtcttgagccgaggctacattgacggctaagacgacaacaaaaaagaa-gaaaagaatcttcattgtggtag |
130 |
Q |
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| T |
9015470 |
ctggtgccggagacaacgaggggctgaggtcttgagccgaggcgatagaggcagccaacatggcgacgaaaaagaaggagaagaat-ttcattgttgtag |
9015372 |
T |
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| Q |
131 |
ctgatgatgccattgc |
146 |
Q |
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| T |
9015371 |
ctgatgatgccattgc |
9015356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 74
Target Start/End: Complemental strand, 8747001 - 8746959
Alignment:
| Q |
32 |
ctggtgccggagccaacgagggactgaggtcttgagccgaggc |
74 |
Q |
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| T |
8747001 |
ctggtgctggagccaacgagggactgaggtcttgggcagaggc |
8746959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 139
Target Start/End: Complemental strand, 8988392 - 8988291
Alignment:
| Q |
32 |
ctggtgccggagccaacgagggactgaggtcttgagccgaggctacattgacggctaagacgacaacaaaaaagaagaaaagaatcttcattgtggtagc |
131 |
Q |
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||||||| |||| |||||||||||| |||||||| ||||||||||| | |||| || |||| ||||||| |||| ||||| ||| ||||||||||| |
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| T |
8988392 |
ctggtgctggagacaacgagggactaaggtcttgggccgaggctac---ggcggcgaatacgatgacaaaaatgaag--aagaa-cttgattgtggtagc |
8988299 |
T |
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| Q |
132 |
tgatgatg |
139 |
Q |
| |
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|||||||| |
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| T |
8988298 |
tgatgatg |
8988291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 74
Target Start/End: Complemental strand, 9023497 - 9023455
Alignment:
| Q |
32 |
ctggtgccggagccaacgagggactgaggtcttgagccgaggc |
74 |
Q |
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| T |
9023497 |
ctggtgccggagccaacgagggactaaggtcttgggcagaggc |
9023455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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