View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14771_low_13 (Length: 384)
Name: NF14771_low_13
Description: NF14771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14771_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 45513260 - 45513626
Alignment:
| Q |
1 |
cctcatgctttcacgaccttgttctccctggttcatctcagtatttactacaactatcttgattcaggttcatcattttcgttcaataacctaagaaagc |
100 |
Q |
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| T |
45513260 |
cctcatgctttcacgaacttgtcatccctggtgcatctcagtatttactacaactatcttgattcaggttcatcattttcgttcaataacctaagaaagc |
45513359 |
T |
|
| Q |
101 |
ttgtgtatcttgatcttgaatataacaggctttacggtccaattcctgagggttttcaaaacatgacctccattgaatccctctacctttcgacaaacaa |
200 |
Q |
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| T |
45513360 |
ttttgtatcttgatcttgaatataacaggctttacggtccaattcctgagggttttcaaaacatgacctccattgaatccctctacctttcgacaaacaa |
45513459 |
T |
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| Q |
201 |
tttcacatcggttccgccgtggtttttcatctttgggaaacttactcatcttggtctttctaccaatgagcttcatggtccaattccaggggtttttcga |
300 |
Q |
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| T |
45513460 |
tttcacatcggttccgccgtggtttttcatctttgggaaacttactcatcttggtctttctaccaatgagcttcatggtccaattccaggggtttttcga |
45513559 |
T |
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| Q |
301 |
aacatgacttcaattgaataccttagcctttctaaaaatagtttaacttcaattccatcatggtttg |
367 |
Q |
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| T |
45513560 |
aacatgacttcaattgaataccttagcctttctaaaaatagtttaacttcaattccatcatggtttg |
45513626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 365
Target Start/End: Original strand, 45513098 - 45513198
Alignment:
| Q |
265 |
aatgagcttcatggtccaattccaggggtttttcgaaacatgacttcaattgaataccttagcctttctaaaaatagtttaacttcaattccatcatggt |
364 |
Q |
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||||||||||||||||| ||||| | | |||| ||||||||||||| ||||||| || ||||||| ||||| ||| ||||| ||||||| ||||| |
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| T |
45513098 |
aatgagcttcatggtccgattcctgagtcttttggaaacatgacttccattgaatcactctacctttctggaaataatttcacttctattccattatggt |
45513197 |
T |
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| Q |
365 |
t |
365 |
Q |
| |
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| T |
45513198 |
t |
45513198 |
T |
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