View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14771_low_16 (Length: 352)
Name: NF14771_low_16
Description: NF14771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14771_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 342
Target Start/End: Original strand, 7620123 - 7620447
Alignment:
| Q |
18 |
acctttcaggtttgaactctaatggatcaacccattcttttggatctcgagcgatggcccatacattaaccaaaagggttgaaccctttggaatgtggta |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
7620123 |
acctttcaggtttgaactctaatggatcaacccattcttttgggtctcgagcgatggcccatacattgaccaaaagagttgaaccctttggaatgtggta |
7620222 |
T |
|
| Q |
118 |
cccaaaaatctcacaactttcagatgcaattcgcgggagggaaagaggtgttgatggatgcaagcggaatgtttcttttatcactgcttgcagataaggt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
7620223 |
cccaaaaatctcacaactttcagatgcaattcgcgggagggaaagaggtgttgatggatgcaagcggaatgtttcttttatcactgcttgtaggtaaggt |
7620322 |
T |
|
| Q |
218 |
aggttaggtatgtcgtcttctttcacgttcctatctcggcccacaacattgtccaattcttgctgaacttgagctaagattcttgggtttcgaattaatt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7620323 |
aggttaggtatgtcgtcttctttcacgttcctatctcgacccacaacattgtccaattcttgttgaacttgagctaagattcttgggtttcgaattaatt |
7620422 |
T |
|
| Q |
318 |
ctgcaatggcccattctgtgctgct |
342 |
Q |
| |
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|||||||||||||||||||| |||| |
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| T |
7620423 |
ctgcaatggcccattctgtggtgct |
7620447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 7663769 - 7663445
Alignment:
| Q |
18 |
acctttcaggtttgaactctaatggatcaacccattcttttggatctcgagcgatggcccatacattaaccaaaagggttgaaccctttggaatgtggta |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
7663769 |
acctttcaggtttgaactctaatggatcaacccattcttttgggtctcgagcgatggcccatacattaaccaaaagagttgaaccctttggaatgtggta |
7663670 |
T |
|
| Q |
118 |
cccaaaaatctcacaactttcagatgcaattcgcgggagggaaagaggtgttgatggatgcaagcggaatgtttcttttatcactgcttgcagataaggt |
217 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||| |
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| T |
7663669 |
cccaaaaatctcacaactttcagatgcaattcgtgggagggaaagaggtgttgatggatgcaagcggaaagtttcttttatcactgcttgtaggtaaggt |
7663570 |
T |
|
| Q |
218 |
aggttaggtatgtcgtcttctttcacgttcctatctcggcccacaacattgtccaattcttgctgaacttgagctaagattcttgggtttcgaattaatt |
317 |
Q |
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||||||||||||||||||||||||||||||||||| | ||||||||| ||||| ||||||| || |||| ||||| |||||||||||||||||||||| |
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| T |
7663569 |
aggttaggtatgtcgtcttctttcacgttcctatcactgcccacaactttgtctaattcttcttggactttagctagaattcttgggtttcgaattaatt |
7663470 |
T |
|
| Q |
318 |
ctgcaatggcccattctgtgctgct |
342 |
Q |
| |
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|||||||||||||||||||| |||| |
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| T |
7663469 |
ctgcaatggcccattctgtggtgct |
7663445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 332
Target Start/End: Complemental strand, 7669466 - 7669154
Alignment:
| Q |
18 |
acctttcaggtttgaactctaatggatcaacccattcttttggatctcgagcgatggcccatacattaaccaaaagggttgaaccctttggaatgtggta |
117 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||| |||||||| |||||| |
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|
| T |
7669466 |
acctttcaggtttgaatcctaatggatcaacccattcttttggatcacgagcaatggcccatacattaaccaaaagagttgaactctttggaacgtggta |
7669367 |
T |
|
| Q |
118 |
cccaaaaatctcacaactttcagatgcaattcgcgggagggaaagaggtgttgatggatgcaagcggaatgtttcttttatcactgcttgcagataaggt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||| || |||||| |
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| T |
7669366 |
cccaaaaatctcacaactttcagatgcaattcgtgggagggaaagaggtgttgatgggtgcaagcgaaatgtttcttttatcactgtttgtaggtaaggt |
7669267 |
T |
|
| Q |
218 |
aggttaggtatgtcgtcttctttcacgttcctatctcggcccacaacattgtccaattcttgctgaacttgagctaagattcttgggtttcgaattaatt |
317 |
Q |
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|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || | || |
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| T |
7669266 |
aggttaggtatgtcatct--tttcacgttcctatctcggcccacaacattgtccaattcttgttgaacttgagctaagattcttgggtttttgatcattt |
7669169 |
T |
|
| Q |
318 |
ctgcaatggcccatt |
332 |
Q |
| |
|
|||||||||||||| |
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| T |
7669168 |
ttgcaatggcccatt |
7669154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 26 - 334
Target Start/End: Complemental strand, 7683000 - 7682692
Alignment:
| Q |
26 |
ggtttgaactctaatggatcaacccattcttttggatctcgagcgatggcccatacattaaccaaaagggttgaaccctttggaatgtggtacccaaaaa |
125 |
Q |
| |
|
|||||||||| |||||||||||||||| || | | || ||||| |||||||||||||| |||||||| |||||| |||||||||||||||||||||||| |
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| T |
7683000 |
ggtttgaactttaatggatcaacccatatttcttggtcacgagctatggcccatacatttaccaaaagagttgaatcctttggaatgtggtacccaaaaa |
7682901 |
T |
|
| Q |
126 |
tctcacaactttcagatgcaattcgcgggagggaaagaggtgttgatggatgcaagcggaatgtttcttttatcactgcttgcagataaggtaggttagg |
225 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||| || |||||||| | ||| |
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| T |
7682900 |
tctcacaactttcagatgcaattcgcgggagggaaagaggtgtagatggatgcaagcgaaatgtttcttttaccactgcttgaaggtaaggtagttgagg |
7682801 |
T |
|
| Q |
226 |
tatgtcgtcttctttcacgttcctatctcggcccacaacattgtccaattcttgctgaacttgagctaagattcttgggtttcgaattaattctgcaatg |
325 |
Q |
| |
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|| || ||||||||||||||||| ||||| || ||||| | || |||||||| || ||||| | | ||||||| ||||| | ||||||||||| |
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| T |
7682800 |
taaatcctcttctttcacgttcctgtctcgaccaacaacggtctctaattcttgttggacttgggtcatgattcttttatttcggagcaattctgcaata |
7682701 |
T |
|
| Q |
326 |
gcccattct |
334 |
Q |
| |
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||||||||| |
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| T |
7682700 |
gcccattct |
7682692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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