View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14771_low_18 (Length: 333)
Name: NF14771_low_18
Description: NF14771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14771_low_18 |
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| [»] scaffold0542 (1 HSPs) |
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Alignment Details
Target: scaffold0542 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: scaffold0542
Description:
Target: scaffold0542; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 7 - 299
Target Start/End: Complemental strand, 7387 - 7092
Alignment:
| Q |
7 |
atgtcgaagaatatagagaagattaattctgacccagaagtacttgtgattatggctggagaagataaacctacttacatagccaaaccaattattatca |
106 |
Q |
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| T |
7387 |
atgtccaagaacatagagaagattaattctgagccagaagtacttgtgattatggctggagaagataaaccaacttacatagccaaaccaattattatca |
7288 |
T |
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| Q |
107 |
ctacttctttaccttattgcacttgtggaggtgaatcaacttcaacaacatcttcatcaaccttaaccaatgaggaa---acattgactaattaagttgt |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7287 |
ctacttctttaccttattgcacttgtggaggtgaatcaacttcaacaacatcttcatcaaccttaaccaatgaggaaattacattgactaattaagttgt |
7188 |
T |
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| Q |
204 |
tgtaagcaacaaaattttgatttagtatagagagcgcttcctttatcatatattctagtggttttgtgagcacttgaatatgatcacttaagatga |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7187 |
tgtaagcaacaaaattttgatttagtatagagagcgcttcctttatcatatattctagtggttttgtgagcacttgaatatgatcacttaagatga |
7092 |
T |
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