View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14771_low_2 (Length: 723)
Name: NF14771_low_2
Description: NF14771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14771_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 562
Target Start/End: Original strand, 12630776 - 12631317
Alignment:
| Q |
1 |
atcaaaagagtgttttattgtcctaggtggatcaataaagttctcttttaaaatccacttgtgttgctttggcggtattgacttgaaatttgtgagtgtg |
100 |
Q |
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| T |
12630776 |
atcaaaagagtgttttattgtcctaggtggatcaataaagttctcttttaaaaaccacttgggttgctttggtggtattgacttgaaatttg-----gtg |
12630870 |
T |
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| Q |
101 |
ctccttcttaaggtctcagttaaaaagaaatataagtatatctaccaacaaccaaataaaaataataattttggtgctcctnnnnnnnttgtaccatggg |
200 |
Q |
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| T |
12630871 |
cccct-----------ca---aaaaagaaatataggtatatctaccaacaaccaagtaaaaataataattttggtgaccctcaaaaaattgtaccatggg |
12630956 |
T |
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| Q |
201 |
cggccgcccatgcttaaggccaccccagatgagactctaggggtacacacattctaaacacctttgataatgatatctcgttaaaggaaagaattaatct |
300 |
Q |
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| T |
12630957 |
cggccgcccatgcttaaggccaccctagatgagactctaggg-taaacacattctaaacacctttgataatgatatctcgttaaaggaaagaactaagct |
12631055 |
T |
|
| Q |
301 |
ttctctcttgatttctctcaggatattcttttcagttgagagattggaaaaagaggttaaaattagagtttgctcttggagagttcttgaagctaattca |
400 |
Q |
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| T |
12631056 |
ttctctcttgatttctttgaggatattcttttcagttgagagattggaaaaaaaggttgaaattagagtttgctcttggacagttcttgaagctaattca |
12631155 |
T |
|
| Q |
401 |
ttgaagttaattgtgctcaatagcccaacccaaacataaaatatatcgaaactacctgaaatccattatcctcttattcactctacctgaccgctcaaga |
500 |
Q |
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| T |
12631156 |
ttgaagttaattatgctcaatagtccaacccaaacataaaatacatcaaaactacctgaaatccattatcctcttattcactctacctgaccgctcaaga |
12631255 |
T |
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| Q |
501 |
gctttccctttctctcaatctcatctcgtcatcttcactctcactttctccacctctcggcc |
562 |
Q |
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| T |
12631256 |
gctttccctttctctcagtctcatctcgtcaccttcactctcactttctcctcctctcggcc |
12631317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 635 - 718
Target Start/End: Original strand, 12631389 - 12631472
Alignment:
| Q |
635 |
agaaaatgagcaattttgaaaatgagtattctatttttcttttgtttcttaatttttattatcttctactatcaccaattttgt |
718 |
Q |
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| T |
12631389 |
agaaaatgaactattttgaaaatgagtattctatttttcttttgtttcttaatttttattatcttctactatcaccaattttgt |
12631472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 116
Target Start/End: Original strand, 38551790 - 38551832
Alignment:
| Q |
74 |
ggtattgacttgaaatttgtgagtgtgctccttcttaaggtct |
116 |
Q |
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| T |
38551790 |
ggtattgatttgaaatttgggagtgtgctctttcttaaggtct |
38551832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 247 - 314
Target Start/End: Complemental strand, 47916815 - 47916751
Alignment:
| Q |
247 |
acacattctaaacacctttgataatgatatctcgttaaaggaaagaattaatctttctctcttgattt |
314 |
Q |
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| T |
47916815 |
acacattataaacaccttggatactgatatcttattataggaaag---taatctttctctcttgattt |
47916751 |
T |
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