View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14771_low_21 (Length: 307)
Name: NF14771_low_21
Description: NF14771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14771_low_21 |
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| [»] scaffold0754 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: scaffold0754 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: scaffold0754
Description:
Target: scaffold0754; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 6455 - 6148
Alignment:
| Q |
1 |
tcagttatcatgggataccctttgtctcctctcatggacccactagctttgnnnnnnnggaactaagcaaagcataaggtgcataaaatgattcaattct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
6455 |
tcagttatcatgggataccctttgtctcctctcatggacccactagctttgtttttttggaactaagcaaagcataaggtacataaaatgattcaattct |
6356 |
T |
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| Q |
101 |
tgccaagattagnnnnnnnnnnnnnnnngcataatatttaacgagttaattattcaggtagccaattaaagatcgatacgtcatattgcatgcatatatt |
200 |
Q |
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| T |
6355 |
tgccaagattagttttctttttctttttgcataatatttaacgagttaattattcaggtagccaattaaagatcgatacgtcatattgcatgcacatatt |
6256 |
T |
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| Q |
201 |
tttggaaaaggatattgcatgaacattgattatgaaaagggtacatgttaatcaagt-aaagtatgacttcgacccaattcttttaaaatattcgaatcg |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6255 |
tttggaaaaggatattgcatgaacattgattatgaaaagggtacatgttaatcaagtaaaagtatgacttcgacccaattcttttaaattattcgaatcg |
6156 |
T |
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| Q |
300 |
gagatcga |
307 |
Q |
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|||||||| |
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| T |
6155 |
gagatcga |
6148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 22220858 - 22221165
Alignment:
| Q |
1 |
tcagttatcatgggataccctttgtctcctctcatggacccactagctttgnnnnnnnggaactaagcaaagcataaggtgcataaaatgattcaattct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
22220858 |
tcagttatcatgggataccctttgtctcctctcatggacccactagctttgtttttttggaactaagcaaagcataaggtacataaaatgattcaattct |
22220957 |
T |
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| Q |
101 |
tgccaagattagnnnnnnnnnnnnnnnngcataatatttaacgagttaattattcaggtagccaattaaagatcgatacgtcatattgcatgcatatatt |
200 |
Q |
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| T |
22220958 |
tgccaagattagttttctttttctttttgcataatatttaacgagttaattattcaggtagccaattaaagatcgatacgtcatattgcatgcacatatt |
22221057 |
T |
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| Q |
201 |
tttggaaaaggatattgcatgaacattgattatgaaaagggtacatgttaatcaagt-aaagtatgacttcgacccaattcttttaaaatattcgaatcg |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
22221058 |
tttggaaaaggatattgcatgaacattgattatgaaaagggtacatgttaatcaagtaaaagtatgacttcgacccaattcttttaaattattcgaatcg |
22221157 |
T |
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| Q |
300 |
gagatcga |
307 |
Q |
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|||||||| |
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| T |
22221158 |
gagatcga |
22221165 |
T |
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