View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14771_low_22 (Length: 293)
Name: NF14771_low_22
Description: NF14771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14771_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 17 - 279
Target Start/End: Original strand, 5591523 - 5591785
Alignment:
| Q |
17 |
cagacagatgcttgaaattaatgaaacccaatcattagttaatcattcagttcctaatcaaataattaccttcgtccttatcacacttcatgtagattat |
116 |
Q |
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| T |
5591523 |
cagacagatgcttgaaattaatgaaacccaatcattagttaatcattcagttcctaatcaaataattaccttcgtccttatcacacttaatgtagattat |
5591622 |
T |
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| Q |
117 |
ttactgtacaaatatatgggataatatcatcagatacacacttatatatagttatcgaataatttatttaacacaaatcaaatcaagcttaaggtggtat |
216 |
Q |
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| T |
5591623 |
ttactgtataaatatatgggataatatcatcagatacacacttatatatagttatcgaataatttatttaacacaaatcaaatcaagcttaaggtggtat |
5591722 |
T |
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| Q |
217 |
aaccaattaaacttgttacatttattccagtttacaatattgctgtttgatatgaaaagattg |
279 |
Q |
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| T |
5591723 |
aaccaattaaacttgttacatttattccagtttacaatattgctgtttgatatgaaaagattg |
5591785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 279
Target Start/End: Original strand, 5581493 - 5581587
Alignment:
| Q |
186 |
aacacaaatcaaatcaagcttaaggtggtataaccaattaaacttgttaca-tttattccagtttacaatattgctgtttgatatgaaaagattg |
279 |
Q |
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| T |
5581493 |
aacacaaatcaaatcaaacttaaggcgagagaaccaattacactaatttgattttattctagtttataataatgctatttgatatgaaaagattg |
5581587 |
T |
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