View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14771_low_25 (Length: 275)
Name: NF14771_low_25
Description: NF14771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14771_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 32 - 258
Target Start/End: Original strand, 26576224 - 26576452
Alignment:
| Q |
32 |
ggtctaaaaacaatgatcaaaggtaacaaattatattttaatatgtgatctttactaaatttaaatgatcaattgagtgaacaaaaggaacaaacacgac |
131 |
Q |
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| T |
26576224 |
ggtctaaaaacaatgatcaaaggtaacaaattatattttaatatgtgatctttactaaatttaaatgatcaattgagtgaacaaaaggaacaaacacgac |
26576323 |
T |
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| Q |
132 |
acatcgatataatcaagagaaatttaataatga--ttttttaaatgacttcatatgccaatatataagtgcaacaaactataaagtggtatatttgttac |
229 |
Q |
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| T |
26576324 |
acatcgatataatcaagagaaatttaataatgattttttttaaatgacttcatatgccaatatataagtgcaacaaactataaagtggtctatttgttac |
26576423 |
T |
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| Q |
230 |
atgcaaaggagaagaaatatggcaatact |
258 |
Q |
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| T |
26576424 |
atgcaaaggagaagaaacatggcaatact |
26576452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 64 - 166
Target Start/End: Original strand, 26570697 - 26570800
Alignment:
| Q |
64 |
atattttaatatgtgatctttactaaatttaaatgatcaattgagtgaacaaaaggaacaa--acacgacacatcgatataatcaagagaaatttaataa |
161 |
Q |
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| T |
26570697 |
atattttaatatgtgacctttactaaatataagtgatcaattgagtgaa-aaaaggaacaagcatataacacatcgatataatcaagagaaatttaataa |
26570795 |
T |
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| Q |
162 |
tgatt |
166 |
Q |
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||||| |
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| T |
26570796 |
tgatt |
26570800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 218
Target Start/End: Original strand, 26584215 - 26584317
Alignment:
| Q |
121 |
acaaacacgacacatcgatataatcaagagaaatttaataatgatttttt-----aaatgacttcatatgccaatatataagtgcaacaaactataaagt |
215 |
Q |
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| T |
26584215 |
acaaacacgacacatcgatataatcaagagacattaaattatgattatttaaaaaaaagggtttcataaggcaatatataagtgctacaaactataaagt |
26584314 |
T |
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| Q |
216 |
ggt |
218 |
Q |
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||| |
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| T |
26584315 |
ggt |
26584317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 2449149 - 2449104
Alignment:
| Q |
66 |
attttaatatgtgatctttactaaatttaaatgatcaattgagtga |
111 |
Q |
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| T |
2449149 |
attttaatgtgtggtctttactaaagttaaatgatcaattaagtga |
2449104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 26584330 - 26584362
Alignment:
| Q |
220 |
tatttgttacatgcaaaggagaagaaatatggc |
252 |
Q |
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| T |
26584330 |
tatttgttacatgcaaaagagaagaaatatggc |
26584362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 159
Target Start/End: Original strand, 1102261 - 1102299
Alignment:
| Q |
121 |
acaaacacgacacatcgatataatcaagagaaatttaat |
159 |
Q |
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| T |
1102261 |
acaaacacgacacatggatataatcaagagatatttaat |
1102299 |
T |
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