View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14771_low_26 (Length: 272)
Name: NF14771_low_26
Description: NF14771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14771_low_26 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 1534892 - 1535163
Alignment:
| Q |
1 |
cacttaacagacaaccgaagctgaatttgattttgaatgatttatcattcaatcacaagacgaatcatccgtttatttcgtgatcatgagatgcagaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1534892 |
cacttaacagacaaccgaagctgaatttgattttgaatgatttatcattcaatcacaagacgaatcatccgtttatttcgtgatcatgagatgcagaaaa |
1534991 |
T |
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| Q |
101 |
ttagtagcagttgcagtttcaagacaattggagaaaacattaattgagtcggtcattcaccttatcctcaggctccttttctttagcttcggtagcagga |
200 |
Q |
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| T |
1534992 |
ttagtagcagttgcagtttcaagacaattggagaaaacattaattgagtcggtcattcaccttatcctcaggctccttttctttagcttcggtagcagga |
1535091 |
T |
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| Q |
201 |
gtttccttatttccatcagctgctgctgcatcttccttgccatcaggcttctcctcagcaacattcatttca |
272 |
Q |
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| T |
1535092 |
gtttccttatttccatcagctgctgctgcatcttcctcgccatcaggcttctcctcagcaacattcttttca |
1535163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 1138740 - 1138472
Alignment:
| Q |
1 |
cacttaacagacaaccgaagctgaatttgattttgaatgatttatcattcaatcacaagacgaatcatccgtttatttcgtgatcatgagatgcagaaaa |
100 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||| |||| || ||||||||||||||||||||||| |
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| T |
1138740 |
cacttaacagacaaccgaagctgaatttaattttgaatgatttatcattcaatcacatgacaaatc---cgttcatctcgtgatcatgagatgcagaaaa |
1138644 |
T |
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| Q |
101 |
ttagtagcagttgcagtttcaagacaattggagaaaacattaattgagtcggtcattcaccttatcctcaggctccttttctttagcttcggtagcagga |
200 |
Q |
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||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
1138643 |
ttagtagcagttgtaaattcaagacaattggagaaaacgttaattgagtcggtcattcaccttatcctcaggctccttttcttcagcttcgggagcagga |
1138544 |
T |
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| Q |
201 |
gtttccttatttccatcagctgctgctgcatcttccttgccatcaggcttctcctcagcaacattcatttca |
272 |
Q |
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|||||||| |||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||| ||||| |
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| T |
1138543 |
gtttccttgtttccatcagctgctgctgcatcttcctcgccaacaggcttgtcctcagcaacattcttttca |
1138472 |
T |
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