View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14771_low_28 (Length: 263)
Name: NF14771_low_28
Description: NF14771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14771_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 39 - 258
Target Start/End: Original strand, 40859803 - 40860039
Alignment:
| Q |
39 |
attaacttcgtatattttacaaaaacttttagaaaacaagtggcacccaaattcccaannnnnnnatattaaacttattcacttgttgcattaattcaat |
138 |
Q |
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| T |
40859803 |
attaacttcgtatattttacaaaa-cttttagaaaacaagtggcacccaaattcccaatttttttatattaaacttcttcacttgttgcattaattcaat |
40859901 |
T |
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| Q |
139 |
accaaggcaccctgttaggtaaccatt------------------tatgtgtaataatcggaatccgaaaaaagtgtcagaatttaatcagttaaaatat |
220 |
Q |
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| T |
40859902 |
accaaggcaccctgttaggtaaccatttatgatttcaaaaccttgtatgtgtaataatcggaatctgaaaaaagtgtcagaatttaatcagttaaaatat |
40860001 |
T |
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| Q |
221 |
aactttaatgatgcaaagttaacgaaccttgttcatct |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
40860002 |
aactttaatgatgcaaagttaacgaaccttgttcatct |
40860039 |
T |
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