View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14771_low_29 (Length: 249)
Name: NF14771_low_29
Description: NF14771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14771_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 35 - 233
Target Start/End: Complemental strand, 28826206 - 28826008
Alignment:
| Q |
35 |
aatatttgtaaaagtgaattttctctgttgtgcaaatnnnnnnntaggaaaaacaaactaacagaatcattattgtcttagaacatgctctgcgttaatg |
134 |
Q |
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| T |
28826206 |
aatatttgtaaaagtgaattttctctgttgtgcaaataaaaaaataggaaaaacaaactaacagaatcattattgtcttagaacatgctctgcgttaatg |
28826107 |
T |
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| Q |
135 |
ttgaaattatgaaaaggactttagattaccttgtatacatcaccaaaacctccttctccaagtttattttcatcattgaagttttttgttgcagctttt |
233 |
Q |
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| T |
28826106 |
ttgaaatcatgaaaaggactttagattaccttgtatacatcaccaaaacctccttctccaagtttattttcatcgttgaagttttttgttgcagctttt |
28826008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 228
Target Start/End: Complemental strand, 28819575 - 28819508
Alignment:
| Q |
161 |
taccttgtatacatcaccaaaacctccttctccaagtttattttcatcattgaagttttttgttgcag |
228 |
Q |
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| T |
28819575 |
taccttgtatacatctccaaaaccgccttctcctagtttattttcatcgttaaaattttttgttgcag |
28819508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 28834881 - 28834814
Alignment:
| Q |
160 |
ttaccttgtatacatcaccaaaacctccttctccaagtttattttcatcattgaagttttttgttgca |
227 |
Q |
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|||| ||||||||||||||||| || |||||||| |||||||||||| ||| ||||||||||||||| |
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| T |
28834881 |
ttactttgtatacatcaccaaagcccccttctcctagtttattttcaccatcaaagttttttgttgca |
28834814 |
T |
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