View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14771_low_3 (Length: 571)
Name: NF14771_low_3
Description: NF14771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14771_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 540; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 18 - 565
Target Start/End: Complemental strand, 4982577 - 4982030
Alignment:
| Q |
18 |
tcttcctgataatctcaggtgctacataagctggagtaccgcatgttgtatgaagaagatcgtctttcttttttgattccaacaatgcactaagaccaaa |
117 |
Q |
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| T |
4982577 |
tcttcctgataatctcaggtgctacataagctggagtaccgcatgttgtatgaagaagatcgtcttttttttttgattccaacaatgcactaagaccaaa |
4982478 |
T |
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| Q |
118 |
atcagcaactttaaggttaccattttcgtcaaggagaagattttctggtttaaggtcgcgatgataaatccctcttctatgacaatgatcaacagctgca |
217 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4982477 |
atcagcaactttaaggttaccattttcgtcgaggagaagattttctggtttaaggtcgcgatgataaatccctcttctatgacaatgatcaacagctgca |
4982378 |
T |
|
| Q |
218 |
ataagttgctggaaatatttcctagccatatcttccctcagcttccctcgagacactttatggaaaagctcgccacctttcacttgttccattgcaaaat |
317 |
Q |
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| T |
4982377 |
ataagttgctggaaatatttcctagccatatcttccctcagcttccctcgagacactttatggaaaagctcgccacctttcacttgttccattgcaaaat |
4982278 |
T |
|
| Q |
318 |
atatctttgttttgcttgccatgacctcgtagaattcgacaatgttagggtgtcgaacaagacgcataaccgagatttcacgcttgatttgctccttcaa |
417 |
Q |
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| T |
4982277 |
atatctttgttttgcttgccatgacctcgtagaattcgacaatgttagggtgtcgaacaagacgcataaccgagatttcacgcttgatttgctccttcaa |
4982178 |
T |
|
| Q |
418 |
accgactttcatgatcatcgctttgtcgaacaccttgatagcaacattttgtcctgtctttaagttccttgcatggtaaactttggcaaaacttccttgg |
517 |
Q |
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| T |
4982177 |
accgactttcatgatcatcgctttgtcgaacaccttgatagcaacattttgtcctgtctttaagttccttgcatggtaaactttggcaaaacttccttgg |
4982078 |
T |
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| Q |
518 |
ccaagcatgcgtcctacctcatacttttgcattagaattgttcctttg |
565 |
Q |
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| T |
4982077 |
ccaagcatgcgtcctacctcatacttttgcattagaattgttcctttg |
4982030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 35828073 - 35828027
Alignment:
| Q |
104 |
gcactaagaccaaaatcagcaactttaaggttaccattttcgtcaag |
150 |
Q |
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| T |
35828073 |
gcactaagaccaaaatctgaaactttaaggttacctttttcatcaag |
35828027 |
T |
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