View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14771_low_32 (Length: 243)
Name: NF14771_low_32
Description: NF14771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14771_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 123; Significance: 3e-63; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 19 - 165
Target Start/End: Original strand, 1534628 - 1534774
Alignment:
| Q |
19 |
agatccctgaggagaaaattgaaaattggaaaatgtaaatacatttatggaaaatatcactnnnnnnnncttggaactgcatatacaaaattacaagttc |
118 |
Q |
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| T |
1534628 |
agatccctgaggagaaaattgaaaattggaaaatgtaaatacatttatggaaaatatcactaaaaaaaacttggaactgcatatacaaaattacaagttc |
1534727 |
T |
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| Q |
119 |
agttcagcagaatgacaaacaatagcatatacaatattacaagtttc |
165 |
Q |
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| T |
1534728 |
agttcagcagaatgacaaacaatagcatatacaatattacaagtttc |
1534774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 1139252 - 1139202
Alignment:
| Q |
19 |
agatccctgaggagaaaattgaaaattggaaaatgtaaatacatttatgga |
69 |
Q |
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| T |
1139252 |
agatccctgaggagaaaattgaaaattggaaaatgtaaatacatttatgga |
1139202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 1138966 - 1138913
Alignment:
| Q |
112 |
caagttcagttcagcagaatgacaaacaatagcatatacaatattacaagtttc |
165 |
Q |
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| T |
1138966 |
caagttcagatcagcagaacgacaaacaaaagcatatacaatattacaagtttc |
1138913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 243
Target Start/End: Original strand, 1534824 - 1534852
Alignment:
| Q |
215 |
caacctcagtcccaacttttaaacaaaac |
243 |
Q |
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| T |
1534824 |
caacctcagtcccaacttttaaacaaaac |
1534852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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