View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14771_low_37 (Length: 222)
Name: NF14771_low_37
Description: NF14771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14771_low_37 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 34582474 - 34582665
Alignment:
| Q |
15 |
aattagaccaagcacaaacaaactaatgatcagcttcacaaaaagattgtcagctaagaaaccaagtctgcatcattaataaactgcaatctagtgattt |
114 |
Q |
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| T |
34582474 |
aattagaccaagcacaaacaaaccaatgatcagcttcacaaaaagattgtcagctaagaaaccaagtctgcatcattaataaactgcaatctagtgattt |
34582573 |
T |
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| Q |
115 |
gatttcattatttttgtttttaatcttatgagttttacaggaatagtgctgaagccagaaatttcggaactgattgttctgttttatccttt |
206 |
Q |
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| T |
34582574 |
gatttcattatttttgtttttaatcttatgagttttacaggaatagtgctgaagccagaaatttcggaactgattgttctgttttgtccttt |
34582665 |
T |
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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 38491944 - 38492017
Alignment:
| Q |
23 |
caagcacaaacaaactaatgatcagcttcacaaaaagattgtcagctaagaaaccaagtctgcatcattaataa |
96 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| | | |||||||||| |||||| |||||||| |
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| T |
38491944 |
caagcacaaacaaattaatgatcagcttcacaaaaagattgataaccaagaaaccaatcctgcattattaataa |
38492017 |
T |
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