View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14771_low_4 (Length: 570)
Name: NF14771_low_4
Description: NF14771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14771_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 408; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 52 - 552
Target Start/End: Complemental strand, 29308833 - 29308327
Alignment:
| Q |
52 |
acaatcatataattttagcaccataacttgtcactgtagatacttgacatgtctcgtgtccaaacaatggttattactagtggttttcaatacttttaat |
151 |
Q |
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| T |
29308833 |
acaatcatataattttagcatcataacttgtcactgtcgatacttgacatgtctcgtgtccaaacaatggttattactagtggttttcaatacttttaat |
29308734 |
T |
|
| Q |
152 |
atttatatttgtgtaatgtgtatatctacaagtcaacaaaataattataatgtgggtcatga------aatagaatatataatgtttaggattcaaatga |
245 |
Q |
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| T |
29308733 |
atttatatttgtgtaatgtgtatatctacaagtccacaaaataattataatgtgggtcatgagtatgaaatagaatatataatgtttaggattcaaatga |
29308634 |
T |
|
| Q |
246 |
gttggtcatagaattttgttcgggaccaaaacatgcgattgnnnnnnnnctaaggaactttggtattttaagtcaacctctcattctcaatctatgcaac |
345 |
Q |
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| T |
29308633 |
tttggtcatagaattttgttcgggaccaaaacatgtgattgttttttttctaaggaactttggtattttaagtcaacctctcattctcaatctatgcaac |
29308534 |
T |
|
| Q |
346 |
tgggaaacaattggattaagtaaactaatgaacaaaataaaaaatagctaggtttgtcaattttggatatgggtggactgtatgtggacaaaatatccta |
445 |
Q |
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| T |
29308533 |
tgggaaacaattggattaagtaaactaatgaacaaaataaaaaatagctaggtttgtcaattttggatatgggtggactgtatgtggacaaaatatccta |
29308434 |
T |
|
| Q |
446 |
aaatgtaattagaaatatcagtcattgttttcaaattgattgacttatattctaaatttatcaaataaaatttgaaaaacggatcatatgattctaactc |
545 |
Q |
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| T |
29308433 |
aattgtaattagaaatatcagtcattgttttatgattgattgacttatattctaactttatcaaataaaatttgaaaaatgattcatatgattctaactc |
29308334 |
T |
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| Q |
546 |
aacgttt |
552 |
Q |
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||||||| |
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| T |
29308333 |
aacgttt |
29308327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 211 - 383
Target Start/End: Complemental strand, 29301964 - 29301790
Alignment:
| Q |
211 |
tgaaatagaatatataatgtttaggattcaaatgagttggtcatagaattttgttcgggaccaaaacatgcgattgnnnnnnnn---ctaaggaactttg |
307 |
Q |
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||||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||||| |||||||||| |||| ||||||||||||| |
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| T |
29301964 |
tgaaatataatatatagtgttttggattcaaatgctttggtcatagaattttgttcggg-ccaaaacatgtgattttttctttctttctaaggaactttg |
29301866 |
T |
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| Q |
308 |
gtattttaagtcaacctctcattctcaatctatgcaactgggaaacaattggattaagtaaactaatgaacaaaat |
383 |
Q |
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| T |
29301865 |
gtattttaagtcaacctctcattgtcaatctatgcaagtgggaaagaattggattatgtaaactaataaataaaat |
29301790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 455 - 552
Target Start/End: Complemental strand, 29301775 - 29301678
Alignment:
| Q |
455 |
tagaaatatcagtcattgttttcaaattgattgacttatattctaaatttatcaaataaaatttgaaaaacggatcatatgattctaactcaacgttt |
552 |
Q |
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||||||||||| |||||||||| | |||||||||| | ||||||| || ||||||||||||||||||| || | || | ||| ||||||||||||| |
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| T |
29301775 |
tagaaatatcaatcattgttttgagattgattgaccttcattctaacttcatcaaataaaatttgaaaagcgaaaaatctaattttaactcaacgttt |
29301678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 29310582 - 29310537
Alignment:
| Q |
4 |
ataattctactccaaaaacaaaaacatgtagtcagctaagacacca |
49 |
Q |
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| T |
29310582 |
ataattttactccaaaaacaaaaacatgttgtcagctaagacacca |
29310537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 111
Target Start/End: Complemental strand, 29302715 - 29302656
Alignment:
| Q |
53 |
caatcatataattttagcaccataacttgtcactgtagatac-ttgacatgtctcgtgtc |
111 |
Q |
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||||||||||| || ||||||||||| ||||| ||| ||||| ||||||||||||||||| |
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| T |
29302715 |
caatcatataacttcagcaccataacatgtcattgtcgatactttgacatgtctcgtgtc |
29302656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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