View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14771_low_6 (Length: 487)
Name: NF14771_low_6
Description: NF14771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14771_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 171 - 469
Target Start/End: Complemental strand, 1699244 - 1698946
Alignment:
| Q |
171 |
catgacagagtcgttttgttttacatataccaacctaggccaataattaaagcattctatgatgcaacatattacagtttgaatctgaacttggcctttt |
270 |
Q |
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| T |
1699244 |
catgacagagtcgttttgttttatatataccaacctaggccaataattaaagcattctatgatgcaacatattacagtttgaatctgaacttggcctttt |
1699145 |
T |
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| Q |
271 |
atcacatgtgtaatgtgtttaaagattatctaaactgtaaattttcctcgctaataacttcttctgtataacactgccaaacgggctcacgtcgcagccc |
370 |
Q |
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| T |
1699144 |
atcacatgtgtaatttgtttaaagattatctaaactgtaaattttcctcgctaataacttcttctgtataacactgccaaacgggctcacgtcgcagccc |
1699045 |
T |
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| Q |
371 |
ataacttataaatagatggttttgtccataccagttggatccttgggcgatgataacaggtttaatgttggatagtgttcagaatattgatcctgttgt |
469 |
Q |
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| T |
1699044 |
ataacttataaatagatggttttgtccataccagttggatccttgggcgatgataacaagtttaatgttggatagtgttcagaatattgatcctgttgt |
1698946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 15 - 137
Target Start/End: Complemental strand, 1699373 - 1699251
Alignment:
| Q |
15 |
caaagggtgtaattgttaccatgccacattcagttcttgttatagggtcaaggctaaaaactgaaatcataactgcataaataactaactaacgattgca |
114 |
Q |
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| T |
1699373 |
caaagggtgtaattgttaccatgccacattcagttcttgttatagggtcaaggctaaaaactgaaatcataactgcataaataactaactaacgattgca |
1699274 |
T |
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| Q |
115 |
ttacagtgctttcaaaaactaac |
137 |
Q |
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| T |
1699273 |
ttacagtgctttcaaaaactaac |
1699251 |
T |
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