View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14771_low_7 (Length: 460)
Name: NF14771_low_7
Description: NF14771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14771_low_7 |
 | |
|
| [»] scaffold0242 (4 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Original strand, 30575121 - 30575566
Alignment:
| Q |
1 |
agataaccctcactctctattctcattcctatatataaccaactctaccttctctctctcatgtaactaactctccctctaagtgggcctatgtgtacat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30575121 |
agataaccctcactctctattctcattcctatatataaccaactctaccttctctctctcatgtaactaactctccctctaagtgggcctatgtgtacat |
30575220 |
T |
|
| Q |
101 |
attagatcctatcaagaacagtctcagcacgcctagagcaccataaatttgctggatgttgaatgacatcaatagtcatacaactttt-ctgccaaacta |
199 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
30575221 |
attagatcctatcaagaacagtctctgcacgcctagagcaccatatattcgctggatgttgaatgacatcaatagtcatacaactttttctgccaaacta |
30575320 |
T |
|
| Q |
200 |
ttccctcaaattgagacaccccaatggattagtgaaccacaaaagcaaagaataatcaaatcatgatgtctttatttaaggcaactacaagctagtactt |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
30575321 |
ttccctcaaattgagacaccccaatggattagtgaaccacaaaagcaaagaataatcaaatcatgttgtctttatttaagccaactacaagctagtactt |
30575420 |
T |
|
| Q |
300 |
ttacttcctccacaacactttcaactttaaaaactatatattcttataaatatgttggtttttctacctataagtaagtattggatttttcatagtattc |
399 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
30575421 |
ttacttcctccacaaccctttcaactttaaaaactatatattcttataaatatgttggtttttctacctataagtaagtattggatttttcataatattc |
30575520 |
T |
|
| Q |
400 |
acttttcttaaattgatagctgacgcacaggctgcacgtctgctgt |
445 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30575521 |
acttttcttaaattgatagctgacgcacaggctgcgcgtctgctgt |
30575566 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0242 (Bit Score: 91; Significance: 6e-44; HSPs: 4)
Name: scaffold0242
Description:
Target: scaffold0242; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 11631 - 11518
Alignment:
| Q |
1 |
agataaccctcactctctattctcattcctatatataaccaactctaccttctctctctcatgtaactaactctccctctaagtgggcctatgtgtacat |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
11631 |
agataatcctcactctctattctcattcctttatataaccaactc-actttctctctctcatgtaactaactctccctctaagtgggcctatgtgaacat |
11533 |
T |
|
| Q |
101 |
attagatcctatcaa |
115 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
11532 |
attagatcctatcaa |
11518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0242; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 7025 - 6913
Alignment:
| Q |
1 |
agataaccctcactctctattctcattcctatatataaccaactctaccttctctctctcatgtaactaactctccctctaagtgggcctatgtgtacat |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7025 |
agataatcctcactctctattctcattcctttatataaccaactc-acttcctctctctcatgtaactaactctccctctaagtgggcctatgtgaacat |
6927 |
T |
|
| Q |
101 |
attagatcctatca |
114 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
6926 |
attagatcctatca |
6913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0242; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 9329 - 9214
Alignment:
| Q |
1 |
agataaccctcactctctattctcattcctatatataaccaactctacct--tctctctctcatgtaactaactctccctctaagtgggcctatgtgtac |
98 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9329 |
agataatcctcactctctattctcattcctttatataaccaactc-actttctctctctctcatgtaactaactctccctctaagtgggcctatgtgtac |
9231 |
T |
|
| Q |
99 |
atattagatcctatcaa |
115 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
9230 |
atattagatcctatcaa |
9214 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0242; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 20466 - 20422
Alignment:
| Q |
1 |
agataaccctcactctctattctcattcctatatataaccaactc |
45 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
20466 |
agataatcctcactctctattctcattcctttatataaccaactc |
20422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 19316624 - 19316512
Alignment:
| Q |
1 |
agataaccctcactctctattctcattcctatatataaccaactctaccttctctctctcatgtaactaactctccctctaagtgggcctatgtgtacat |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19316624 |
agataaccctcactct--attctcattcctttatataaccaactccactttctctctctgatgtaactaactctccctctaagtgggcctatgtgtacat |
19316527 |
T |
|
| Q |
101 |
attagatcctatcaa |
115 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
19316526 |
attagatcctatcaa |
19316512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 19319341 - 19319227
Alignment:
| Q |
1 |
agataaccctcactctctattctcattcctatatataaccaactctaccttctctctctcatgtaactaactctccctctaagtgggcctatgtgtacat |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||| || |||||||| | ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
19319341 |
agataaacctcactctctattctcattcctttatataaccaactccactttctctctttgatgtaactaactctccctctaagtgagcctatgtgtacat |
19319242 |
T |
|
| Q |
101 |
attagatcctatcaa |
115 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
19319241 |
attagatcctatcaa |
19319227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 6e-41; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 30955261 - 30955376
Alignment:
| Q |
1 |
agataaccctcactctctattctcattcctatatataaccaactctacct--tctctctctcatgtaactaactctccctctaagtgggcctatgtgtac |
98 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30955261 |
agataatcctcactctctattctcattcctttatataaccaactc-actttctctctctctcatgtaactaactctccctctaagtgggcctatgtgtac |
30955359 |
T |
|
| Q |
99 |
atattagatcctatcaa |
115 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
30955360 |
atattagatcctatcaa |
30955376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 30957914 - 30958029
Alignment:
| Q |
1 |
agataaccctcactctctattctcattcctatatataaccaactctacct--tctctctctcatgtaactaactctccctctaagtgggcctatgtgtac |
98 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30957914 |
agataatcctcactctctattctcattcctttatataaccaactc-actttctctctctctcatgtaactaactctccctctaagtgggcctatgtgtac |
30958012 |
T |
|
| Q |
99 |
atattagatcctatcaa |
115 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
30958013 |
atattagatcctatcaa |
30958029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 40690132 - 40690018
Alignment:
| Q |
1 |
agataaccctcactctctattctcattcctatatataaccaactctacct--tctctctctcatgtaactaactctccctctaagtgggcctatgtgtac |
98 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40690132 |
agataatcctcactctctattctcattcctttatataaccaactc-actttctctctctctcatgtaactaactctccctctaagtgggcctatgtgtac |
40690034 |
T |
|
| Q |
99 |
atattagatcctatca |
114 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
40690033 |
atattagatcctatca |
40690018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 40692100 - 40691983
Alignment:
| Q |
1 |
agataaccctcactctctattctcattcctatatataaccaactc---taccttctctctctcatgtaactaactctccctctaagtgggcctatgtgta |
97 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40692100 |
agataatcctcactctctattctcattcctttatataaccaactcactttctctctctctctcatgtaactaactctccctctaagtgggcctatgtgta |
40692001 |
T |
|
| Q |
98 |
catattagatcctatcaa |
115 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
40692000 |
catattagatcctatcaa |
40691983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 41495827 - 41495738
Alignment:
| Q |
1 |
agataaccctcactctctattctcattcctatatataaccaactctaccttctctctctcatgtaactaactctccctctaagtgggcct |
90 |
Q |
| |
|
||||| |||| ||||||| ||||||||||| |||||||| ||||| || |||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
41495827 |
agatatcccttactctcttttctcattcctttatataactaactccactttctttctctcgtgtaactaactctccctctaagtgggcct |
41495738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 9e-34; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 44611907 - 44611787
Alignment:
| Q |
1 |
agataaccctcactctctattctcattcctatatataaccaactc------tacct-tctctctctcatgtaactaactctccctctaagtgggcctatg |
93 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44611907 |
agataatcctcactctctattctcattcctttatataaccaactcactttctctctctctctctctcatgtaactaactctccctctaagtgggcctatg |
44611808 |
T |
|
| Q |
94 |
tgtacatattagatcctatca |
114 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
44611807 |
tgtacatattagatcctatca |
44611787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 51 - 114
Target Start/End: Complemental strand, 21899419 - 21899356
Alignment:
| Q |
51 |
tctctctctcatgtaactaactctccctctaagtgggcctatgtgtacatattagatcctatca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21899419 |
tctctctctcatgtaactaactctccctctaagtgggcctatgtgtacatattagatcctatca |
21899356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 21899492 - 21899448
Alignment:
| Q |
1 |
agataaccctcactctctattctcattcctatatataaccaactc |
45 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
21899492 |
agataatcctcactctctattctcattcctttatataaccaactc |
21899448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 4250946 - 4250827
Alignment:
| Q |
1 |
agataaccctcactctctattctcattcctatatataaccaa-----ctctacct-tctctctctcatgtaactaactctccctctaagtgggcctatgt |
94 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||||| || | || ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4250946 |
agataatcctcactctctattctcattcctttatataaccaaactcactttctctctctctctctcatgtaactaactctccctctaagtgggccaatgt |
4250847 |
T |
|
| Q |
95 |
gtacatattagatcctatca |
114 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
4250846 |
gtacatattagatcctatca |
4250827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 51 - 114
Target Start/End: Original strand, 19019846 - 19019909
Alignment:
| Q |
51 |
tctctctctcatgtaactaactctccctctaagtgggcctatgtgtacatattagatcctatca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19019846 |
tctctctctcatgtaactaactctccctctaagtgggcctatgtgtacatattagatcctatca |
19019909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 51 - 114
Target Start/End: Original strand, 3030116 - 3030179
Alignment:
| Q |
51 |
tctctctctcatgtaactaactctccctctaagtgggcctatgtgtacatattagatcctatca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3030116 |
tctctctctcatgtaactaactctccctctaagtgggcctatgtgtgcatattagatcctatca |
3030179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 3030054 - 3030098
Alignment:
| Q |
1 |
agataaccctcactctctattctcattcctatatataaccaactc |
45 |
Q |
| |
|
||||| ||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
3030054 |
agatatccctcactctcaattctcattcctttatataaccaactc |
3030098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 19019755 - 19019799
Alignment:
| Q |
1 |
agataaccctcactctctattctcattcctatatataaccaactc |
45 |
Q |
| |
|
|||||| |||||||||||||||||||| || |||||||||||||| |
|
|
| T |
19019755 |
agataatcctcactctctattctcatttctttatataaccaactc |
19019799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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