View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14771_low_8 (Length: 455)
Name: NF14771_low_8
Description: NF14771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14771_low_8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Original strand, 23322609 - 23323063
Alignment:
| Q |
1 |
caattagaatggaattgaaaccatttgtcaatgcacgaaacatgaaaactatgtgtacaaattggaagatgttttacccattccccttcttcaaactctc |
100 |
Q |
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| T |
23322609 |
caatttgaatgggattgaaaccatttgtcaatgcacgaaacatgaaaactatgtgtacaaattggaagatgttttacccattccccttcttcaaactctc |
23322708 |
T |
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| Q |
101 |
ctagacaaatagcacagtccacatcacttagtttttgttcaacctcatttttcttaaactgaaacatgggaagtgcttgtaccatagagtactccaatcc |
200 |
Q |
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| T |
23322709 |
ctagacaaatagcacagtccacatcacttagtttttgttcaacctcatttttcttaaactgaaacatgggaagtgcttgtaccatagagtactccaatcc |
23322808 |
T |
|
| Q |
201 |
actgtttagaacatgtcgagaagaattgctaggatagaaattcgccagttctggaagtcgtctttgaaaatttgacacatctggaatttgcctttgcaca |
300 |
Q |
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| T |
23322809 |
actgtttagaacatgtcgagaagaattactaggataaaaattcgccagttctggaagtcgtctttgaaaatttgacacatctggaatttgcctttgaaca |
23322908 |
T |
|
| Q |
301 |
tggtttcttgtggcgattgcatggtaaattnnnnnnnncagacgcataaatgcgccatgggagatagatataaagaagaaaacccacactacaataatta |
400 |
Q |
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| T |
23322909 |
tggtttcttgtggcgattgcatggtaaattaaaaaaaacagacgcataaatgcgccatgggagatagatataaagaagaaaacccacactacaataatta |
23323008 |
T |
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| Q |
401 |
taatacaaaaagcaaattctgcagcatcagaaaacatttcaataaacattaagcc |
455 |
Q |
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| T |
23323009 |
taatacaaaaaacaaattctgcagcatcagaaaacatttcaataaacatgaagcc |
23323063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 116
Target Start/End: Original strand, 41158329 - 41158438
Alignment:
| Q |
7 |
gaatggaattgaaaccatttgtcaatgcacgaaacatgaaaactatgtgtacaaattggaagatgttttacccattccccttcttcaaactctcctagac |
106 |
Q |
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||||| ||||||||||| || |||||||| |||||||| |||| ||| ||||| | |||||| |||||| | |||||||| ||||||| ||||| | || |
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| T |
41158329 |
gaatgcaattgaaaccacttatcaatgcatgaaacatggaaaccatggttacaattaggaagaagttttagcaattcccctccttcaaattctcccaaac |
41158428 |
T |
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| Q |
107 |
aaatagcaca |
116 |
Q |
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| T |
41158429 |
aaatagcaca |
41158438 |
T |
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