View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14772_low_2 (Length: 360)

Name: NF14772_low_2
Description: NF14772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14772_low_2
NF14772_low_2
[»] chr2 (14 HSPs)
chr2 (51-316)||(38045032-38045297)
chr2 (12-164)||(38019277-38019432)
chr2 (12-166)||(38042991-38043145)
chr2 (12-166)||(38067338-38067492)
chr2 (12-164)||(38028351-38028503)
chr2 (300-347)||(38045315-38045362)
chr2 (106-160)||(38022059-38022113)
chr2 (106-160)||(38046593-38046647)
chr2 (112-167)||(38003630-38003685)
chr2 (112-167)||(38031881-38031936)
chr2 (114-160)||(38033963-38034009)
chr2 (110-157)||(38069108-38069155)
chr2 (239-280)||(38043179-38043220)
chr2 (239-280)||(38067526-38067567)
[»] chr7 (1 HSPs)
chr7 (108-170)||(42403947-42404008)


Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 51 - 316
Target Start/End: Original strand, 38045032 - 38045297
Alignment:
Q  51 tcttcttcttcttctgctatggctcttaattctaatagacaacaacataaggcagagcaatcagaggaatctttgaggacagtcatgtacttgagttgct 150  Q
    |||||||||||||||||||||| |  || |||||| |||||| || | || ||| ||||||| ||||||||||||||||  |||||||||||||||||||    
T  38045032 tcttcttcttcttctgctatggtttctatttctaagagacaaaaagagaatgcaaagcaatcggaggaatctttgaggaaggtcatgtacttgagttgct 38045131  T
Q  151 ggggtcccaattaattagaggagatcatagaactaatttttaactctattatttgatctttcttcatgtataatgtattgcacaatatttgaaagagatt 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38045132 ggggtcccaattaattagaggagatcatagaactaatttttaactctattatttgatctttcttcatgtataatgtattgcacaatatttgaaagagatt 38045231  T
Q  251 aatgtaaattatgatgaattgatgaagatagcaaccttgaatttctctgaaattcaggattattct 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38045232 aatgtaaattatgatgaattgatgaagatagcaaccttgaatttctctgaaattcaggattattct 38045297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 12 - 164
Target Start/End: Original strand, 38019277 - 38019432
Alignment:
Q  12 aatgtcaggtcgttttctcaagcaaagaaactttcatcgtcttcttcttcttctgctatggctcttaattctaatagacaac---aacataaggcagagc 108  Q
    |||||||| ||||||||||||||||| ||||||||||| ||||| |||||||||||||||| |  |||| |||| | |||||   || | || ||| ||     
T  38019277 aatgtcagatcgttttctcaagcaaaaaaactttcatcttcttcctcttcttctgctatggtttctaatgctaacaaacaacaaaaagagaaagcaaagg 38019376  T
Q  109 aatcagaggaatctttgaggacagtcatgtacttgagttgctggggtcccaattaa 164  Q
    ||||||| ||||||||||||| |||||||||||||||||| |||||||| ||||||    
T  38019377 aatcagaagaatctttgaggaaagtcatgtacttgagttgttggggtcctaattaa 38019432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 12 - 166
Target Start/End: Original strand, 38042991 - 38043145
Alignment:
Q  12 aatgtcaggtcgttttctcaagcaaagaaactttcatcgtcttcttcttcttctgctatggctcttaattct---aatagacaacaacataaggcagagc 108  Q
    |||||||| || ||||||||||||||||| |||||||| ||||| ||||||   ||||||| |  |||||||   || ||||||  | | ||| || |||    
T  38042991 aatgtcagatcattttctcaagcaaagaagctttcatcctcttcctcttct---gctatggtttctaattcttctaagagacaaagagagaagacaaagc 38043087  T
Q  109 aatcagaggaatctttgaggacagtcatgtacttgagttgctggggtcccaattaatt 166  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  38043088 aatcagaggaatctttgaggaaagtcatgtacttgagttgttggggtcccaattaatt 38043145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 12 - 166
Target Start/End: Original strand, 38067338 - 38067492
Alignment:
Q  12 aatgtcaggtcgttttctcaagcaaagaaactttcatcgtcttcttcttcttctgctatggctcttaattct---aatagacaacaacataaggcagagc 108  Q
    |||||||| || ||||||||||||||||| |||||||| ||||| ||||||   ||||||| |  |||||||   || ||||||  | | ||| || |||    
T  38067338 aatgtcagatcattttctcaagcaaagaagctttcatcctcttcctcttct---gctatggtttctaattcttctaagagacaaagagagaagacaaagc 38067434  T
Q  109 aatcagaggaatctttgaggacagtcatgtacttgagttgctggggtcccaattaatt 166  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  38067435 aatcagaggaatctttgaggaaagtcatgtacttgagttgttggggtcccaattaatt 38067492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 12 - 164
Target Start/End: Original strand, 38028351 - 38028503
Alignment:
Q  12 aatgtcaggtcgttttctcaagcaaagaaactttcatcgtcttcttcttcttctgctatggctcttaattct---aatagacaacaacataaggcagagc 108  Q
    |||||||| || ||||||||||||||||| |||||||| ||||| ||||||   ||||||| |  |||||||   || ||||||  | | ||| || |||    
T  38028351 aatgtcagatcattttctcaagcaaagaagctttcatcctcttcctcttct---gctatggtttctaattcttctaagagacaaagagagaagacaaagc 38028447  T
Q  109 aatcagaggaatctttgaggacagtcatgtacttgagttgctggggtcccaattaa 164  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  38028448 aatcagaggaatctttgaggaaagtcatgtacttgagttgttggggtcccaattaa 38028503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 300 - 347
Target Start/End: Original strand, 38045315 - 38045362
Alignment:
Q  300 aaattcaggattattctaactatgctttgtattacctatgttcttttt 347  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38045315 aaattcaggattattctaactatgctttgtattacctatgttcttttt 38045362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 106 - 160
Target Start/End: Original strand, 38022059 - 38022113
Alignment:
Q  106 agcaatcagaggaatctttgaggacagtcatgtacttgagttgctggggtcccaa 160  Q
    |||| ||||||||||||||||| || ||||||| |||||||||||||||||||||    
T  38022059 agcagtcagaggaatctttgagaactgtcatgttcttgagttgctggggtcccaa 38022113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 106 - 160
Target Start/End: Original strand, 38046593 - 38046647
Alignment:
Q  106 agcaatcagaggaatctttgaggacagtcatgtacttgagttgctggggtcccaa 160  Q
    |||||||||||||||||||||| |||||||||||||| || || |||||||||||    
T  38046593 agcaatcagaggaatctttgagaacagtcatgtacttaagctgttggggtcccaa 38046647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 167
Target Start/End: Original strand, 38003630 - 38003685
Alignment:
Q  112 cagaggaatctttgaggacagtcatgtacttgagttgctggggtcccaattaatta 167  Q
    ||||||| ||||||||||| |||||||||||||| || ||||||||||||| ||||    
T  38003630 cagaggagtctttgaggactgtcatgtacttgagctgttggggtcccaattgatta 38003685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 167
Target Start/End: Original strand, 38031881 - 38031936
Alignment:
Q  112 cagaggaatctttgaggacagtcatgtacttgagttgctggggtcccaattaatta 167  Q
    ||||||| ||||||||||| |||||||||||||| ||||||||||| |||| ||||    
T  38031881 cagaggagtctttgaggactgtcatgtacttgagctgctggggtcctaattgatta 38031936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 38033963 - 38034009
Alignment:
Q  114 gaggaatctttgaggacagtcatgtacttgagttgctggggtcccaa 160  Q
    |||||||||||||| || ||||||| |||||||||||||||||||||    
T  38033963 gaggaatctttgagaacggtcatgttcttgagttgctggggtcccaa 38034009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 110 - 157
Target Start/End: Original strand, 38069108 - 38069155
Alignment:
Q  110 atcagaggaatctttgaggacagtcatgtacttgagttgctggggtcc 157  Q
    |||||||||||||||||| |||||||||||||| || || ||||||||    
T  38069108 atcagaggaatctttgagaacagtcatgtacttaagctgttggggtcc 38069155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 280
Target Start/End: Original strand, 38043179 - 38043220
Alignment:
Q  239 ttgaaagagattaatgtaaattatgatgaattgatgaagata 280  Q
    |||||||| ||| ||||||||||||||||||| |||||||||    
T  38043179 ttgaaagatattgatgtaaattatgatgaattaatgaagata 38043220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 280
Target Start/End: Original strand, 38067526 - 38067567
Alignment:
Q  239 ttgaaagagattaatgtaaattatgatgaattgatgaagata 280  Q
    |||||||| ||| ||||||||||||||||||| |||||||||    
T  38067526 ttgaaagatattgatgtaaattatgatgaattaatgaagata 38067567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 170
Target Start/End: Original strand, 42403947 - 42404008
Alignment:
Q  108 caatcagaggaatctttgaggacagtcatgtacttgagttgctggggtcccaattaattagag 170  Q
    |||||||||| ||||| ||| | |||||||||||| |||| ||||||||||||||||||||||    
T  42403947 caatcagagggatcttagagaaaagtcatgtacttcagtt-ctggggtcccaattaattagag 42404008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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