View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14772_low_4 (Length: 242)

Name: NF14772_low_4
Description: NF14772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14772_low_4
NF14772_low_4
[»] chr3 (11 HSPs)
chr3 (2-225)||(55452131-55452365)
chr3 (159-223)||(46450063-46450127)
chr3 (160-219)||(46160946-46161005)
chr3 (158-219)||(28529248-28529311)
chr3 (158-219)||(41452017-41452080)
chr3 (160-219)||(24734702-24734763)
chr3 (163-215)||(30624633-30624685)
chr3 (160-219)||(5452182-5452243)
chr3 (160-196)||(20493592-20493628)
chr3 (158-219)||(37776825-37776888)
chr3 (164-196)||(40716009-40716041)
[»] chr4 (9 HSPs)
chr4 (160-223)||(20225459-20225522)
chr4 (160-224)||(22592301-22592367)
chr4 (163-219)||(43771126-43771184)
chr4 (164-219)||(46242066-46242121)
chr4 (158-216)||(8108951-8109011)
chr4 (164-196)||(39016813-39016845)
chr4 (160-196)||(40991736-40991772)
chr4 (158-194)||(49242165-49242201)
chr4 (160-196)||(50571861-50571897)
[»] chr7 (12 HSPs)
chr7 (162-223)||(48374557-48374618)
chr7 (160-219)||(32205076-32205134)
chr7 (159-219)||(33008100-33008162)
chr7 (161-196)||(31731404-31731439)
chr7 (163-218)||(46517293-46517348)
chr7 (160-219)||(31502586-31502647)
chr7 (163-196)||(19422981-19423014)
chr7 (158-219)||(11824066-11824129)
chr7 (158-218)||(14648765-14648825)
chr7 (158-219)||(22189934-22189997)
chr7 (160-196)||(27888279-27888315)
chr7 (160-196)||(42863581-42863617)
[»] chr8 (7 HSPs)
chr8 (160-219)||(34861309-34861368)
chr8 (160-218)||(43506535-43506592)
chr8 (164-218)||(6387564-6387618)
chr8 (157-223)||(3099760-3099828)
chr8 (160-196)||(7599569-7599605)
chr8 (160-196)||(13407318-13407354)
chr8 (160-196)||(34952458-34952494)
[»] chr2 (14 HSPs)
chr2 (164-219)||(4602989-4603046)
chr2 (158-219)||(45554562-45554625)
chr2 (159-219)||(11539419-11539481)
chr2 (159-215)||(15508910-15508968)
chr2 (160-219)||(17188064-17188123)
chr2 (158-218)||(18511332-18511394)
chr2 (159-194)||(33678264-33678299)
chr2 (158-196)||(12989186-12989224)
chr2 (158-196)||(32856286-32856324)
chr2 (159-196)||(31395592-31395629)
chr2 (158-216)||(42183017-42183077)
chr2 (163-219)||(19427369-19427425)
chr2 (160-216)||(20951603-20951659)
chr2 (158-219)||(26767883-26767946)
[»] chr1 (14 HSPs)
chr1 (172-216)||(15928682-15928726)
chr1 (159-219)||(41958081-41958141)
chr1 (160-196)||(44739115-44739151)
chr1 (160-219)||(2225223-2225282)
chr1 (160-219)||(6133746-6133807)
chr1 (160-194)||(14093995-14094029)
chr1 (157-216)||(32848708-32848769)
chr1 (160-222)||(931371-931435)
chr1 (157-214)||(6325939-6325996)
chr1 (159-196)||(11851920-11851957)
chr1 (161-219)||(39039477-39039537)
chr1 (160-196)||(13889293-13889329)
chr1 (160-196)||(25543337-25543373)
chr1 (159-216)||(43851160-43851219)
[»] chr5 (8 HSPs)
chr5 (163-218)||(10142099-10142154)
chr5 (160-222)||(17700168-17700230)
chr5 (161-214)||(13456162-13456215)
chr5 (158-219)||(13456287-13456348)
chr5 (158-216)||(26072231-26072291)
chr5 (156-196)||(13381926-13381966)
chr5 (160-216)||(24915183-24915239)
chr5 (160-216)||(24991014-24991070)
[»] chr6 (5 HSPs)
chr6 (160-194)||(12753909-12753943)
chr6 (158-216)||(19090207-19090267)
chr6 (163-219)||(1392630-1392686)
chr6 (164-216)||(16187433-16187485)
chr6 (164-216)||(16187651-16187703)


Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 2 - 225
Target Start/End: Complemental strand, 55452365 - 55452131
Alignment:
Q  2 aatggacacctccattaagaaatggagagaatcctaactcaggaaattaaaggagtaatagaaaagaagtg-----------gatagacattgtatttca 90  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |           |||||||||| |||||||    
T  55452365 aatggacacctccattaagaaatggagagaatcctaactcaggaaattaaaggagtaatagaaaagaagcgtcaaactcaaagatagacattatatttca 55452266  T
Q  91 aagagacgttgtatttcattttcagtagttgtagattgattgttgaacaagtgttcaattaagacggatgaggaatgttagcaacactcacttttgaaca 190  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55452265 aagagacattgtatttcattttcagtagttgtagattgattgttgaacaagtgttcaattaagacggatgaggaatgttagcaacactcacttttgaaca 55452166  T
Q  191 ctctctggtactcactcttttattggatggaatac 225  Q
    |||||||||||||||||||||||||||||||||||    
T  55452165 ctctctggtactcactcttttattggatggaatac 55452131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 46450063 - 46450127
Alignment:
Q  159 tgaggaatgttagcaacactcacttttgaacactctctggtactcactcttttattggatggaat 223  Q
    ||||||||| |||||||||||||||||||||||||||| | ||||||||||||||| ||||||||    
T  46450063 tgaggaatgctagcaacactcacttttgaacactctctagcactcactcttttattagatggaat 46450127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 160 - 219
Target Start/End: Original strand, 46160946 - 46161005
Alignment:
Q  160 gaggaatgttagcaacactcacttttgaacactctctggtactcactcttttattggatg 219  Q
    |||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  46160946 gaggaatgctagcaacactcacttttgaacactctctagcactcactcttttattggatg 46161005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 28529248 - 28529311
Alignment:
Q  158 atgaggaatgttagcaacactcacttttgaaca--ctctctggtactcactcttttattggatg 219  Q
    |||||||||| ||||||||||||||||| ||||  |||||| | ||||||||||||||||||||    
T  28529248 atgaggaatgctagcaacactcacttttcaacactctctctagcactcactcttttattggatg 28529311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 41452080 - 41452017
Alignment:
Q  158 atgaggaatgttagcaacactcacttttgaacac--tctctggtactcactcttttattggatg 219  Q
    |||||||||  ||||||||||||||||| |||||  ||||| ||||||||||||||||||||||    
T  41452080 atgaggaatactagcaacactcacttttcaacacaatctctagtactcactcttttattggatg 41452017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 219
Target Start/End: Original strand, 24734702 - 24734763
Alignment:
Q  160 gaggaatgttagcaacactcacttttgaacac--tctctggtactcactcttttattggatg 219  Q
    |||||||  ||||||||||||||||| |||||  ||||| ||||||||||||||||||||||    
T  24734702 gaggaatactagcaacactcacttttcaacacaatctctagtactcactcttttattggatg 24734763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 30624633 - 30624685
Alignment:
Q  163 gaatgttagcaacactcacttttgaacactctctggtactcactcttttattg 215  Q
    ||||| ||||||||||||||||||| ||||||||   ||||||||||||||||    
T  30624633 gaatgctagcaacactcacttttgagcactctctaacactcactcttttattg 30624685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 219
Target Start/End: Complemental strand, 5452243 - 5452182
Alignment:
Q  160 gaggaatgttagcaacactcacttttgaacactctctggtac--tcactcttttattggatg 219  Q
    |||||||| ||||||||||||||||| ||||||||||   ||  ||||||||||||||||||    
T  5452243 gaggaatgctagcaacactcacttttcaacactctctttaacattcactcttttattggatg 5452182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 20493628 - 20493592
Alignment:
Q  160 gaggaatgttagcaacactcacttttgaacactctct 196  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  20493628 gaggaatgctagcaacactcacttttcaacactctct 20493592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 37776888 - 37776825
Alignment:
Q  158 atgaggaatgttagcaacactcacttttgaacac--tctctggtactcactcttttattggatg 219  Q
    |||||||||| ||||||||||||||||| |||||  ||||  | ||||||||||||||| ||||    
T  37776888 atgaggaatgctagcaacactcacttttcaacactttctccagcactcactcttttattagatg 37776825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 40716041 - 40716009
Alignment:
Q  164 aatgttagcaacactcacttttgaacactctct 196  Q
    |||||||||||||||||||||| ||||||||||    
T  40716041 aatgttagcaacactcacttttcaacactctct 40716009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 160 - 223
Target Start/End: Complemental strand, 20225522 - 20225459
Alignment:
Q  160 gaggaatgttagcaacactcacttttgaacactctctggtactcactcttttattggatggaat 223  Q
    |||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  20225522 gaggaatgctagcaacactcacttttgaacactctctagcactcactcttttattggatggaat 20225459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 224
Target Start/End: Original strand, 22592301 - 22592367
Alignment:
Q  160 gaggaatgttagcaacactcacttttgaaca--ctctctggtactcactcttttattggatggaata 224  Q
    ||||| || ||||||| ||||||||||||||  |||||||| |||||||||||||||||||| ||||    
T  22592301 gaggattgatagcaacgctcacttttgaacattctctctggcactcactcttttattggatgaaata 22592367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 219
Target Start/End: Original strand, 43771126 - 43771184
Alignment:
Q  163 gaatgttagcaacactcacttttgaacactctctggt--actcactcttttattggatg 219  Q
    ||||| ||||||||||||||||||||||||||||     ||||||||||||||||||||    
T  43771126 gaatggtagcaacactcacttttgaacactctctctatgactcactcttttattggatg 43771184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 46242121 - 46242066
Alignment:
Q  164 aatgttagcaacactcacttttgaacactctctggtactcactcttttattggatg 219  Q
    ||||||| |||||||||||||| |||||||||| | |||||| ||||||| |||||    
T  46242121 aatgttatcaacactcactttttaacactctctagaactcacacttttatgggatg 46242066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 216
Target Start/End: Original strand, 8108951 - 8109011
Alignment:
Q  158 atgaggaatgttagcaacactcacttttgaaca--ctctctggtactcactcttttattgg 216  Q
    ||||| |||| ||||||||||||||||| ||||  |||||| | |||||||||||||||||    
T  8108951 atgagaaatgctagcaacactcacttttcaacactctctctagcactcactcttttattgg 8109011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 39016845 - 39016813
Alignment:
Q  164 aatgttagcaacactcacttttgaacactctct 196  Q
    |||||||||||||||| ||||||||||||||||    
T  39016845 aatgttagcaacactctcttttgaacactctct 39016813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 40991772 - 40991736
Alignment:
Q  160 gaggaatgttagcaacactcacttttgaacactctct 196  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  40991772 gaggaatgctagcaacactcacttttcaacactctct 40991736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 49242165 - 49242201
Alignment:
Q  158 atgaggaatgttagcaacactcacttttgaacactct 194  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  49242165 atgaggagtgttaggaacactcacttttgaacactct 49242201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 50571861 - 50571897
Alignment:
Q  160 gaggaatgttagcaacactcacttttgaacactctct 196  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  50571861 gaggaatgttagcaacagtcacttttcaacactctct 50571897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 162 - 223
Target Start/End: Complemental strand, 48374618 - 48374557
Alignment:
Q  162 ggaatgttagcaacactcacttttgaacactctctggtactcactcttttattggatggaat 223  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  48374618 ggaatgctagcaacactcacttttgaacactctctagtactcactcttttattgaatggaat 48374557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 160 - 219
Target Start/End: Original strand, 32205076 - 32205134
Alignment:
Q  160 gaggaatgttagcaacactcacttttgaacactctctggtactcactcttttattggatg 219  Q
    |||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  32205076 gaggaatgctagcaacactcacttttgaacactctct-ctactcactcttttattggatg 32205134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 33008100 - 33008162
Alignment:
Q  159 tgaggaatgttagcaacactcacttttgaacac--tctctggtactcactcttttattggatg 219  Q
    ||||||||| |||||||||||||||||||||||  ||||| | ||||||||||||||||||||    
T  33008100 tgaggaatgctagcaacactcacttttgaacactatctctagcactcactcttttattggatg 33008162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 196
Target Start/End: Complemental strand, 31731439 - 31731404
Alignment:
Q  161 aggaatgttagcaacactcacttttgaacactctct 196  Q
    ||||||||||||||||||||||||||||||||||||    
T  31731439 aggaatgttagcaacactcacttttgaacactctct 31731404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 218
Target Start/End: Original strand, 46517293 - 46517348
Alignment:
Q  163 gaatgttagcaacactcacttttgaacactctctggtactcactcttttattggat 218  Q
    ||||| ||||||||||||||||| |||||||||| | |||||||| ||||||||||    
T  46517293 gaatgctagcaacactcactttttaacactctctagcactcactcatttattggat 46517348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 219
Target Start/End: Complemental strand, 31502647 - 31502586
Alignment:
Q  160 gaggaatgttagcaacactcacttttgaaca--ctctctggtactcactcttttattggatg 219  Q
    |||||||| ||||||||||||||||| ||||  ||||||   ||||||||||||||||||||    
T  31502647 gaggaatgctagcaacactcacttttcaacagtctctctaacactcactcttttattggatg 31502586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 196
Target Start/End: Complemental strand, 19423014 - 19422981
Alignment:
Q  163 gaatgttagcaacactcacttttgaacactctct 196  Q
    ||||||||||||||||||||||| ||||||||||    
T  19423014 gaatgttagcaacactcacttttcaacactctct 19422981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 11824066 - 11824129
Alignment:
Q  158 atgaggaatgttagcaacactcacttttgaa--cactctctggtactcactcttttattggatg 219  Q
    ||||| ||||||||||||||||| |||| ||  | |||||| | ||||||||||||||||||||    
T  11824066 atgagaaatgttagcaacactcatttttcaacgctctctctagcactcactcttttattggatg 11824129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 218
Target Start/End: Complemental strand, 14648825 - 14648765
Alignment:
Q  158 atgaggaatgttagcaacactcacttttgaacactctctggtactcactcttttattggat 218  Q
    |||||||| | |||||||||||| |||| || |||||||  | ||||||||||||||||||    
T  14648825 atgaggaaggctagcaacactcatttttaaatactctctactcctcactcttttattggat 14648765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 22189934 - 22189997
Alignment:
Q  158 atgaggaatgttagcaacactcacttttgaacactctctg--gtactcactcttttattggatg 219  Q
    |||||||||| ||| |||||||| |||| ||||||||||   | ||||||||||||||||||||    
T  22189934 atgaggaatgctagaaacactcatttttcaacactctctctagcactcactcttttattggatg 22189997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 27888279 - 27888315
Alignment:
Q  160 gaggaatgttagcaacactcacttttgaacactctct 196  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  27888279 gaggaatgctagcaacactcacttttgagcactctct 27888315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 42863617 - 42863581
Alignment:
Q  160 gaggaatgttagcaacactcacttttgaacactctct 196  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  42863617 gaggaatgctagcaacactcacttttaaacactctct 42863581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 219
Target Start/End: Complemental strand, 34861368 - 34861309
Alignment:
Q  160 gaggaatgttagcaacactcacttttgaacactctctggtactcactcttttattggatg 219  Q
    |||||||| ||||| | ||||||||| |||||||||| | ||||||||||||||||||||    
T  34861368 gaggaatgctagcacctctcacttttcaacactctctagcactcactcttttattggatg 34861309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 43506535 - 43506592
Alignment:
Q  160 gaggaatgttagcaacactcacttttgaacactctctggtactcactcttttattggat 218  Q
    |||||||| ||||||||||||||||||||||||||||   ||||||| |||||||||||    
T  43506535 gaggaatgctagcaacactcacttttgaacactctctaacactcact-ttttattggat 43506592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 6387564 - 6387618
Alignment:
Q  164 aatgttagcaacactcacttttgaacactctctggtactcactcttttattggat 218  Q
    |||| ||||||||||| |||||| |||||||||   |||||||||||||||||||    
T  6387564 aatgctagcaacactctcttttggacactctctaacactcactcttttattggat 6387618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 223
Target Start/End: Complemental strand, 3099828 - 3099760
Alignment:
Q  157 gatgaggaatgttagcaacactcacttttgaacac--tctctggtactcactcttttattggatggaat 223  Q
    |||||| ||||||||||| ||||| ||||||||||  ||||  ||||||| ||||||||| ||||||||    
T  3099828 gatgagaaatgttagcaatactcatttttgaacactatctcccgtactcattcttttattagatggaat 3099760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 7599605 - 7599569
Alignment:
Q  160 gaggaatgttagcaacactcacttttgaacactctct 196  Q
    ||||||||||||||||||||  |||||||||||||||    
T  7599605 gaggaatgttagcaacactcttttttgaacactctct 7599569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 13407318 - 13407354
Alignment:
Q  160 gaggaatgttagcaacactcacttttgaacactctct 196  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  13407318 gaggaatgctagcaacactctcttttgaacactctct 13407354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 34952458 - 34952494
Alignment:
Q  160 gaggaatgttagcaacactcacttttgaacactctct 196  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  34952458 gaggaatgctagcaacactcactttttaacactctct 34952494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 4603046 - 4602989
Alignment:
Q  164 aatgttagcaacactcacttttgaacactctct--ggtactcactcttttattggatg 219  Q
    |||||||||||||||||||||| ||| ||| ||  |||||||||||||||||||||||    
T  4603046 aatgttagcaacactcacttttcaacgctccctttggtactcactcttttattggatg 4602989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 45554562 - 45554625
Alignment:
Q  158 atgaggaatgttagcaacactcacttttgaaca--ctctctggtactcactcttttattggatg 219  Q
    |||| ||||| ||||||||||||||||| ||||  |||||| | ||||||||||||||||||||    
T  45554562 atgaagaatgctagcaacactcacttttcaacactctctctagcactcactcttttattggatg 45554625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 11539419 - 11539481
Alignment:
Q  159 tgaggaatgttagcaacactcacttttgaacactc--tctggtactcactcttttattggatg 219  Q
    ||||||||| || ||||||||| ||||||||||||  ||| | ||||||||||||||||||||    
T  11539419 tgaggaatgctaacaacactcatttttgaacactctttctagcactcactcttttattggatg 11539481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 15508910 - 15508968
Alignment:
Q  159 tgaggaatgttagcaacactcacttttgaacactct--ctggtactcactcttttattg 215  Q
    ||||||||||||||||||||| ||||||||||||||  ||   ||||||||||||||||    
T  15508910 tgaggaatgttagcaacactctcttttgaacactctttctaacactcactcttttattg 15508968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 219
Target Start/End: Original strand, 17188064 - 17188123
Alignment:
Q  160 gaggaatgttagcaacactcacttttgaacactctctggtactcactcttttattggatg 219  Q
    ||||||||||| |||||||||||||| ||| ||||||   ||||||| ||||||||||||    
T  17188064 gaggaatgttaccaacactcacttttcaactctctctatcactcactattttattggatg 17188123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 218
Target Start/End: Complemental strand, 18511394 - 18511332
Alignment:
Q  158 atgaggaatgttagcaacactcacttttgaacactct--ctggtactcactcttttattggat 218  Q
    |||||||||| ||||||||||||||||| ||||||||  ||   |||||||||||||||||||    
T  18511394 atgaggaatgctagcaacactcactttttaacactctcactatcactcactcttttattggat 18511332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 194
Target Start/End: Complemental strand, 33678299 - 33678264
Alignment:
Q  159 tgaggaatgttagcaacactcacttttgaacactct 194  Q
    ||||||||| ||||||||||||||||||||||||||    
T  33678299 tgaggaatgctagcaacactcacttttgaacactct 33678264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 196
Target Start/End: Original strand, 12989186 - 12989224
Alignment:
Q  158 atgaggaatgttagcaacactcacttttgaacactctct 196  Q
    |||||||||| ||||||||||||||||| ||||||||||    
T  12989186 atgaggaatgctagcaacactcacttttcaacactctct 12989224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 196
Target Start/End: Complemental strand, 32856324 - 32856286
Alignment:
Q  158 atgaggaatgttagcaacactcacttttgaacactctct 196  Q
    |||||||||| || |||||||||||||||||||||||||    
T  32856324 atgaggaatgctaacaacactcacttttgaacactctct 32856286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 196
Target Start/End: Complemental strand, 31395629 - 31395592
Alignment:
Q  159 tgaggaatgttagcaacactcacttttgaacactctct 196  Q
    ||||||||||||||||||||| ||||||| ||||||||    
T  31395629 tgaggaatgttagcaacactctcttttgagcactctct 31395592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 216
Target Start/End: Complemental strand, 42183077 - 42183017
Alignment:
Q  158 atgaggaatgttagcaacactcacttttgaacactctct--ggtactcactcttttattgg 216  Q
    |||||||||| ||| ||||||| ||||||||||||||||  || ||| |||||||||||||    
T  42183077 atgaggaatgctagtaacactctcttttgaacactctctccggcactaactcttttattgg 42183017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 219
Target Start/End: Complemental strand, 19427425 - 19427369
Alignment:
Q  163 gaatgttagcaacactcacttttgaacactctctggtactcactcttttattggatg 219  Q
    ||||| ||||||||||| ||||| |||||||||| | ||||||||| | ||||||||    
T  19427425 gaatgctagcaacactctctttttaacactctctagcactcactctatcattggatg 19427369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 20951603 - 20951659
Alignment:
Q  160 gaggaatgttagcaacactcacttttgaacactctctggtactcactcttttattgg 216  Q
    |||||||| ||||||||||| ||||||| |||||||| | ||| | |||||||||||    
T  20951603 gaggaatgctagcaacactctcttttgagcactctctagcacttattcttttattgg 20951659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 26767946 - 26767883
Alignment:
Q  158 atgaggaatgttagcaacactcacttttgaaca--ctctctggtactcactcttttattggatg 219  Q
    |||||||||| ||||||||||||||||| ||||  |||||| | ||| ||||||||| ||||||    
T  26767946 atgaggaatgctagcaacactcacttttcaacattctctctagcacttactcttttactggatg 26767883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 15928726 - 15928682
Alignment:
Q  172 caacactcacttttgaacactctctggtactcactcttttattgg 216  Q
    |||||||| ||||||||||||||||  ||||||||||||||||||    
T  15928726 caacactctcttttgaacactctctaatactcactcttttattgg 15928682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 41958081 - 41958141
Alignment:
Q  159 tgaggaatgttagcaacactcacttttgaacactctctggtactcactcttttattggatg 219  Q
    ||||||||| ||| ||||||||||||| |||||||||  | |||||||| |||||||||||    
T  41958081 tgaggaatgctagtaacactcacttttcaacactctcaagcactcactcatttattggatg 41958141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 44739115 - 44739151
Alignment:
Q  160 gaggaatgttagcaacactcacttttgaacactctct 196  Q
    |||||||||||||||||||| ||||||||||||||||    
T  44739115 gaggaatgttagcaacactctcttttgaacactctct 44739151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 219
Target Start/End: Original strand, 2225223 - 2225282
Alignment:
Q  160 gaggaatgttagcaacactcacttttgaacactctctggtactcactcttttattggatg 219  Q
    |||||||| ||| |||||||| |||| |||||||||| | || |||||||||||||||||    
T  2225223 gaggaatgctagtaacactcaattttcaacactctctagcacccactcttttattggatg 2225282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 219
Target Start/End: Complemental strand, 6133807 - 6133746
Alignment:
Q  160 gaggaatgttagcaacactcacttttgaaca--ctctctggtactcactcttttattggatg 219  Q
    |||||||| ||||||||||||||||| ||||  |||||| | |||||| |||||||||||||    
T  6133807 gaggaatgctagcaacactcacttttcaacaatctctctagcactcacccttttattggatg 6133746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 194
Target Start/End: Original strand, 14093995 - 14094029
Alignment:
Q  160 gaggaatgttagcaacactcacttttgaacactct 194  Q
    |||||||||||||||||||| ||||||||||||||    
T  14093995 gaggaatgttagcaacactctcttttgaacactct 14094029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 32848769 - 32848708
Alignment:
Q  157 gatgaggaatgttagcaacactcacttttgaacact--ctctggtactcactcttttattgg 216  Q
    ||||||||||| || |||||||| ||||||||||||  |||| | |||||||||||||||||    
T  32848769 gatgaggaatgctaacaacactctcttttgaacactctctctagcactcactcttttattgg 32848708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 931371 - 931435
Alignment:
Q  160 gaggaatgttagcaacactcacttttgaacac--tctctggtactcactcttttattggatggaa 222  Q
    |||||||| ||||||||||||||||| ||| |  |||||  ||||||||||||||||| ||||||    
T  931371 gaggaatgctagcaacactcacttttcaactctatctctaatactcactcttttattgaatggaa 931435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 214
Target Start/End: Complemental strand, 6325996 - 6325939
Alignment:
Q  157 gatgaggaatgttagcaacactcacttttgaacactctctggtactcactcttttatt 214  Q
    ||||||||||  ||||||| ||||||||||||||||||||  || |||||| ||||||    
T  6325996 gatgaggaatactagcaacgctcacttttgaacactctctaataatcactcatttatt 6325939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 11851920 - 11851957
Alignment:
Q  159 tgaggaatgttagcaacactcacttttgaacactctct 196  Q
    ||||||||| |||||||| |||||||||||||||||||    
T  11851920 tgaggaatgctagcaacattcacttttgaacactctct 11851957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 219
Target Start/End: Complemental strand, 39039537 - 39039477
Alignment:
Q  161 aggaatgttagcaacactcacttttgaacactctctg--gtactcactcttttattggatg 219  Q
    ||||||| ||||||||||||||||| |||||||| |   | ||||||||||||||||||||    
T  39039537 aggaatgctagcaacactcacttttcaacactctttttagcactcactcttttattggatg 39039477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 13889329 - 13889293
Alignment:
Q  160 gaggaatgttagcaacactcacttttgaacactctct 196  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  13889329 gaggaatgctagcaacactctcttttgaacactctct 13889293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 25543337 - 25543373
Alignment:
Q  160 gaggaatgttagcaacactcacttttgaacactctct 196  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  25543337 gaggaatgctagcaacactcacttttaaacactctct 25543373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 216
Target Start/End: Complemental strand, 43851219 - 43851160
Alignment:
Q  159 tgaggaatgttagcaacactcactttt--gaacactctctggtactcactcttttattgg 216  Q
    ||||||||||||||||||||| |||||  |  |||||||| |||||||||| ||||||||    
T  43851219 tgaggaatgttagcaacactctcttttaagcgcactctctagtactcactcatttattgg 43851160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 218
Target Start/End: Complemental strand, 10142154 - 10142099
Alignment:
Q  163 gaatgttagcaacactcacttttgaacactctctggtactcactcttttattggat 218  Q
    ||||| |||||||||||| |||| |||||||| | | |||||||||||||||||||    
T  10142154 gaatgctagcaacactcatttttcaacactctatagcactcactcttttattggat 10142099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 17700168 - 17700230
Alignment:
Q  160 gaggaatgttagcaacactcacttttgaacactctctggtactcactcttttattggatggaa 222  Q
    |||||||  |||||||||||||||||||| ||||| |    ||||||||||||||||||||||    
T  17700168 gaggaatactagcaacactcacttttgaatactctatacccctcactcttttattggatggaa 17700230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 13456162 - 13456215
Alignment:
Q  161 aggaatgttagcaacactcacttttgaacactctctggtactcactcttttatt 214  Q
    |||| |||||||||||||| |||||||  ||||||| | |||||||||||||||    
T  13456162 aggagtgttagcaacactctcttttgagtactctctagcactcactcttttatt 13456215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 13456348 - 13456287
Alignment:
Q  158 atgaggaatgttagcaacactcacttttgaacactctctggtactcactcttttattggatg 219  Q
    |||||||||| ||||| ||||  ||||||| ||||||||  ||||||||||||||| |||||    
T  13456348 atgaggaatgctagcagcactttcttttgagcactctctattactcactcttttatcggatg 13456287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 216
Target Start/End: Complemental strand, 26072291 - 26072231
Alignment:
Q  158 atgaggaatgttagcaacactcacttttgaaca--ctctctggtactcactcttttattgg 216  Q
    |||||||||| ||||||||||| ||||||| ||  |||||| | |||||||||||||||||    
T  26072291 atgaggaatgctagcaacactctcttttgagcattctctctagcactcactcttttattgg 26072231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 196
Target Start/End: Complemental strand, 13381966 - 13381926
Alignment:
Q  156 ggatgaggaatgttagcaacactcacttttgaacactctct 196  Q
    ||||||| ||||||||||||||| ||||||||||| |||||    
T  13381966 ggatgagaaatgttagcaacacttacttttgaacagtctct 13381926  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 24915239 - 24915183
Alignment:
Q  160 gaggaatgttagcaacactcacttttgaacactctctggtactcactcttttattgg 216  Q
    |||||||  ||||||||||| ||||| | |||||||| | |||||||||||||||||    
T  24915239 gaggaatactagcaacactctcttttaagcactctctagcactcactcttttattgg 24915183  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 24991070 - 24991014
Alignment:
Q  160 gaggaatgttagcaacactcacttttgaacactctctggtactcactcttttattgg 216  Q
    |||||||  ||||||||||| ||||| | |||||||| | |||||||||||||||||    
T  24991070 gaggaatactagcaacactctcttttaagcactctctagcactcactcttttattgg 24991014  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 194
Target Start/End: Complemental strand, 12753943 - 12753909
Alignment:
Q  160 gaggaatgttagcaacactcacttttgaacactct 194  Q
    |||||||| ||||||||||||||||||||||||||    
T  12753943 gaggaatgctagcaacactcacttttgaacactct 12753909  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 216
Target Start/End: Original strand, 19090207 - 19090267
Alignment:
Q  158 atgaggaatgttagcaacactcacttttga--acactctctggtactcactcttttattgg 216  Q
    |||||||||| ||||||||||| |||||||  || |||||| | |||||||||||||||||    
T  19090207 atgaggaatgctagcaacactctcttttgagcactctctctagcactcactcttttattgg 19090267  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 219
Target Start/End: Original strand, 1392630 - 1392686
Alignment:
Q  163 gaatgttagcaacactcacttttgaacactctctggtactcactcttttattggatg 219  Q
    ||||||||| ||||||||||||| |||||||||| | ||||  | ||||||||||||    
T  1392630 gaatgttagtaacactcactttttaacactctctagcactctattttttattggatg 1392686  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 16187433 - 16187485
Alignment:
Q  164 aatgttagcaacactcacttttgaacactctctggtactcactcttttattgg 216  Q
    |||||||||||||||| ||||| ||||||||||  |||||||||  |||||||    
T  16187433 aatgttagcaacactctcttttcaacactctctaatactcactcgcttattgg 16187485  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 16187651 - 16187703
Alignment:
Q  164 aatgttagcaacactcacttttgaacactctctggtactcactcttttattgg 216  Q
    |||||||||||||||| ||||| ||||||||||  |||||||||  |||||||    
T  16187651 aatgttagcaacactctcttttcaacactctctaatactcactcgcttattgg 16187703  T

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