View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14773_high_4 (Length: 406)
Name: NF14773_high_4
Description: NF14773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14773_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 38187307 - 38186916
Alignment:
| Q |
1 |
catagaatattgtttgtatttaataatattgacaattatggttctgatcttaaatgttacagcagaaatgctgtggacagtgagtatcaggaggctatct |
100 |
Q |
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| T |
38187307 |
catagaatattgtttgtatttaataatattgacaattatggttctgatcttaaatgttacagcagaaatgctgtggacagtgagtatcaggaggctatct |
38187208 |
T |
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| Q |
101 |
gcaaagatgaaattggattccatgcagttatggggaaaggacattgttgactgtccaatctgatggtccagaaaaatgcagatttaaattttatttttag |
200 |
Q |
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| T |
38187207 |
gcaaagatgaaattggattccatgcagttatggggaaaggacattgttgactgtccaatctgatggtccagaaaaatgcagatttaaattttatttttag |
38187108 |
T |
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| Q |
201 |
aatttaaaatatcaagtttgaatctagaccgtcatatcttgattgaatgctcatcgatatctcaaatgtatgtaatatcaactgcacgagagtttgatcc |
300 |
Q |
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| T |
38187107 |
aatttaaaatatcaagtttgaatgtagaccgtcatatcttgattgaatgctcatcgatatctcgaatgtgtgtaatatcaactgcacgagagtttgatcc |
38187008 |
T |
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| Q |
301 |
taatattgacatatcaaatgactttgcaaccttgtacattgttgatgaatctagtaccaataagtattgaaagatggttccaaacagaattt |
392 |
Q |
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| T |
38187007 |
taatattgacatatcaaatgactttgcaaccttgtacattgttgatgaatctagtaccaataagtattgaaagatggttccaaacagaattt |
38186916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 249
Target Start/End: Original strand, 42519949 - 42520025
Alignment:
| Q |
172 |
aaaaatgcagatttaaattttatttttagaatttaaaatatcaagtttgaatctagaccgtcatatcttgattgaatg |
249 |
Q |
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| T |
42519949 |
aaaaatgcagatttcaattttgtttt-ataatttaaaatattgagtttgaatctagattgtctggtcttgattgaatg |
42520025 |
T |
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