View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14773_high_6 (Length: 323)
Name: NF14773_high_6
Description: NF14773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14773_high_6 |
 | |
|
| [»] scaffold0459 (1 HSPs) |
| | |
|
| [»] scaffold0366 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 15 - 315
Target Start/End: Original strand, 44371157 - 44371457
Alignment:
| Q |
15 |
aggatgtgtacttacaatatcgacttggttcattgtttctgaccctgacggtgttataattaatggtgggtgggaagtttgagtgccagtttaatgtcct |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44371157 |
aggatgtgtacttacaatatcgacttggttcattgtttctgaccctgacggtgttataattaatggtgggtgggaagtttgagtgccagtttaatgtcct |
44371256 |
T |
|
| Q |
115 |
gagagcagaaaagtctcctccagtcatagtggattctgtcatggaaccatattgttcctctgattcatatttcagaaattgcggttgttgattagacaaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44371257 |
gagagcagaaaagtctcctccagtcatagtggattctgtcatggaaccatattgttcctctgattcatatttcagaaattgcggttgttgattagacaaa |
44371356 |
T |
|
| Q |
215 |
gaaataaatgtgagtctttttgttccttcagcttagacaaggtataagtataaggcataacttatcattttgaaaaacagaaggaatgttcctacaagta |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44371357 |
gaaataaatgtgagtctttttgttccttcagctaagacaaggtataagtataaggcataacttatcattttgaaaaacagaaggaatgttcctacaagta |
44371456 |
T |
|
| Q |
315 |
t |
315 |
Q |
| |
|
| |
|
|
| T |
44371457 |
t |
44371457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0459 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: scaffold0459
Description:
Target: scaffold0459; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 15 - 315
Target Start/End: Complemental strand, 3699 - 3395
Alignment:
| Q |
15 |
aggatgtgtacttacaatatcgac----ttggttcattgtttctgaccctgacggtgttataattaatggtgggtgggaagtttgagtgccagtttaatg |
110 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3699 |
aggatgtgtacttacaatatcgaccgacttggttcattgtttctgaccctgacggtgttataattaatggtgggtgggaagtttgagtgccagtttaatg |
3600 |
T |
|
| Q |
111 |
tcctgagagcagaaaagtctcctccagtcatagtggattctgtcatggaaccatattgttcctctgattcatatttcagaaattgcggttgttgattaga |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3599 |
tcctgagagcagaaaagtctcctccagtcatagtggattctgtcatggaaccatattgttcctctgattcatatttcagaaattgcggttgttgattaga |
3500 |
T |
|
| Q |
211 |
caaagaaataaatgtgagtctttttgttccttcagcttagacaaggtataagtataaggcataacttatcattttgaaaaacagaaggaatgttcctaca |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3499 |
caaagaaataaatgtgagtctttttgttccttcagctcagacaaggtataagtataaggcataacttatcattttgaaaaacagaaggaatgttcctaca |
3400 |
T |
|
| Q |
311 |
agtat |
315 |
Q |
| |
|
||||| |
|
|
| T |
3399 |
agtat |
3395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 15 - 315
Target Start/End: Complemental strand, 3699 - 3395
Alignment:
| Q |
15 |
aggatgtgtacttacaatatcgac----ttggttcattgtttctgaccctgacggtgttataattaatggtgggtgggaagtttgagtgccagtttaatg |
110 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3699 |
aggatgtgtacttacaatatcgaccgacttggttcattgtttctgaccctgacggtgttataattaatggtgggtgggaagtttgagtgccagtttaatg |
3600 |
T |
|
| Q |
111 |
tcctgagagcagaaaagtctcctccagtcatagtggattctgtcatggaaccatattgttcctctgattcatatttcagaaattgcggttgttgattaga |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3599 |
tcctgagagcagaaaagtctcctccagtcatagtggattctgtcatggaaccatattgttcctctgattcatatttcagaaattgcggttgttgattaga |
3500 |
T |
|
| Q |
211 |
caaagaaataaatgtgagtctttttgttccttcagcttagacaaggtataagtataaggcataacttatcattttgaaaaacagaaggaatgttcctaca |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3499 |
caaagaaataaatgtgagtctttttgttccttcagctcagacaaggtataagtataaggcataacttatcattttgaaaaacagaaggaatgttcctaca |
3400 |
T |
|
| Q |
311 |
agtat |
315 |
Q |
| |
|
||||| |
|
|
| T |
3399 |
agtat |
3395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University