View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14773_high_7 (Length: 319)
Name: NF14773_high_7
Description: NF14773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14773_high_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 14 - 290
Target Start/End: Complemental strand, 35786038 - 35785755
Alignment:
| Q |
14 |
ttttcctctttgtctcttctgattttgtggtga-------gttatttaattttactttatttttctgttactcagaattgataattcaatgcattgttaa |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35786038 |
ttttcctctttgtctcttctgattttgtggtgactggtgagttatttaattttactttatttttctgttactcagaattgataattcaatgcattgttaa |
35785939 |
T |
|
| Q |
107 |
ttgattaaatcggtttctaaggttttctgatttcttggaatttcaactttgactgttcggaaatgacaattgatagatagggagtcaaatttgatttctt |
206 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35785938 |
ttgattaaatcggtttctagggttttctgatttcttggaatttcaactttgactgtttggaaatgacaattgatagatagggagtcaaatttgatttctt |
35785839 |
T |
|
| Q |
207 |
actcttcaccaaaccaaaaagatgagtaaatttttctgataaaaaatggtacaggataatgtaaccaaatgtttttctttcaat |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35785838 |
actcttcaccaaaccaaaaagatgagtaaatttttctgataaaaaatggtacaggataatgtaaccaaatgtttttctgtcaat |
35785755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University