View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14773_low_1 (Length: 535)
Name: NF14773_low_1
Description: NF14773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14773_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 169 - 502
Target Start/End: Complemental strand, 39603658 - 39603322
Alignment:
| Q |
169 |
gtttttgaggtgctgagttttgctacacaaaatatatttataggatgtgtgtttatgtttatattttccttatgtctattgtatgaattgtaaattgtag |
268 |
Q |
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| T |
39603658 |
gtttttgaggtgctgagtttttctacacaaaatatatgtataggatgtgtgtttgtgtctacattttcattatgtctattgtatgaattataaattgtag |
39603559 |
T |
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| Q |
269 |
ctttgaaacctatttatggaacaagaaatttgtgtttgattatatctaccacttgaactccaaggtgattgaaacaattatcaagttcaaggtgattgaa |
368 |
Q |
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| T |
39603558 |
ctttgaaacctatgtatggaacaagaattttgtgcttgcttatgtctactacttgaactccaaggtgattgaaacaattatcaagtttaaggtgattgaa |
39603459 |
T |
|
| Q |
369 |
acaatcatgatttggatcttacttatttgattttattttttagatatggagtcttcatgttctccacaatccaagatacca--cacac-ttcatctgcta |
465 |
Q |
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| T |
39603458 |
acaatcatgatttagatcttacttatttgattttattttgtagatatggagttttcacgttgtccacaacccaagttaccatttccacttttatctgcta |
39603359 |
T |
|
| Q |
466 |
cctctaaggaagaaccaaaggcttcactagttaatga |
502 |
Q |
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| T |
39603358 |
cctctaagggagaaccaaaggtttcactagttaatga |
39603322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 39603700 - 39603663
Alignment:
| Q |
84 |
tacaagtgagtgttgtacttgcatcttgttgtttttgc |
121 |
Q |
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| T |
39603700 |
tacaagtgagtgttgtacttgcatctctttgtttttgc |
39603663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 123; Significance: 6e-63; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 334 - 519
Target Start/End: Complemental strand, 21827749 - 21827561
Alignment:
| Q |
334 |
tgattgaaacaattatcaagttcaaggtgattgaaacaatcatgatttggatcttacttatttgattttattttttagatatggagtcttcatgttctcc |
433 |
Q |
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| T |
21827749 |
tgattgaaacagttatcaagtttaaggtgattgaaacaatcatgatttggatcttacttatttgattttattttgtagatatggagtcttcatgttgtcc |
21827650 |
T |
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| Q |
434 |
acaatccaagatacca---cacacttcatctgctacctctaaggaagaaccaaaggcttcactagttaatgaaggaatgacgaatatac |
519 |
Q |
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| T |
21827649 |
acaatccaagttgccatttccaactttatctgctacctctaagggagaaccaaaggtttcactagttaatgacggaatgatgaatatac |
21827561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 169 - 295
Target Start/End: Complemental strand, 21827905 - 21827774
Alignment:
| Q |
169 |
gtttttgaggtgctgagtttt-gctacacaaaatatatttataggat----gtgtgtttatgtttatattttccttatgtctattgtatgaattgtaaat |
263 |
Q |
| |
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|||||||||||||||| |||| |||||||||||||||| |||||||| |||||||| ||| || |||||| |||||||||||||||||| ||||||| |
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| T |
21827905 |
gtttttgaggtgctgattttttgctacacaaaatatatgtataggatcgatgtgtgtttgtgtctacattttctttatgtctattgtatgaactgtaaat |
21827806 |
T |
|
| Q |
264 |
tgtagctttgaaacctatttatggaacaagaa |
295 |
Q |
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| T |
21827805 |
tgtagctttgaaacctatgtatggaacaagaa |
21827774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 394 - 519
Target Start/End: Complemental strand, 43022325 - 43022197
Alignment:
| Q |
394 |
tttgattttattttttagatatggagtcttcatgttctccacaatccaagatacca----cacacttcatctgctacctctaaggaagaaccaaaggctt |
489 |
Q |
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| T |
43022325 |
tttgattttattttccagatatggagtcttctcgttgcccacagcccaagataccatcttca-acttcatctgctacctccaagggagaaccaaaggttt |
43022227 |
T |
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| Q |
490 |
cactagttaatgaaggaatgacgaatatac |
519 |
Q |
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| T |
43022226 |
cacaagttaatgaaggaatgacaaatatac |
43022197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 346 - 392
Target Start/End: Complemental strand, 42812035 - 42811989
Alignment:
| Q |
346 |
ttatcaagttcaaggtgattgaaacaatcatgatttggatcttactt |
392 |
Q |
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| T |
42812035 |
ttatcaagttcaaggtgattgaaacaatcatgatttggatcttactt |
42811989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 346 - 392
Target Start/End: Complemental strand, 43022414 - 43022368
Alignment:
| Q |
346 |
ttatcaagttcaaggtgattgaaacaatcatgatttggatcttactt |
392 |
Q |
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| T |
43022414 |
ttatcaagttcaaggtgattgaaacaatcatgatttggatcttactt |
43022368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 349 - 389
Target Start/End: Complemental strand, 35061082 - 35061042
Alignment:
| Q |
349 |
tcaagttcaaggtgattgaaacaatcatgatttggatctta |
389 |
Q |
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| T |
35061082 |
tcaagttcaaggtgattgaaacaatcatgatttggatctta |
35061042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 453 - 519
Target Start/End: Complemental strand, 42811883 - 42811817
Alignment:
| Q |
453 |
acttcatctgctacctctaaggaagaaccaaaggcttcactagttaatgaaggaatgacgaatatac |
519 |
Q |
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| T |
42811883 |
acttcatctgcaacctccaagggagaaccaaaggtttcacaagttaatgaaggaatggcaaatatac |
42811817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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