View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14773_low_3 (Length: 465)

Name: NF14773_low_3
Description: NF14773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14773_low_3
NF14773_low_3
[»] chr4 (34 HSPs)
chr4 (200-446)||(54702115-54702361)
chr4 (214-352)||(4592575-4592713)
chr4 (214-364)||(49983848-49983998)
chr4 (207-347)||(11306479-11306618)
chr4 (207-366)||(48845920-48846078)
chr4 (217-366)||(37724497-37724644)
chr4 (207-348)||(52485566-52485706)
chr4 (214-359)||(2515744-2515893)
chr4 (207-303)||(4416746-4416842)
chr4 (216-348)||(17524428-17524559)
chr4 (215-342)||(20870883-20871010)
chr4 (207-303)||(45505328-45505424)
chr4 (207-303)||(18414770-18414866)
chr4 (207-348)||(4416524-4416663)
chr4 (214-338)||(18414922-18415044)
chr4 (214-351)||(45505114-45505250)
chr4 (225-364)||(20268931-20269070)
chr4 (207-350)||(16398962-16399104)
chr4 (208-299)||(48845761-48845852)
chr4 (367-448)||(48845809-48845890)
chr4 (207-298)||(17524252-17524343)
chr4 (214-281)||(46397361-46397428)
chr4 (216-263)||(48658341-48658388)
chr4 (209-303)||(49984067-49984161)
chr4 (213-303)||(21376103-21376193)
chr4 (207-289)||(43913442-43913524)
chr4 (225-299)||(45170692-45170766)
chr4 (367-448)||(4416712-4416793)
chr4 (367-440)||(52485447-52485520)
chr4 (68-149)||(54702412-54702493)
chr4 (375-439)||(17524310-17524374)
chr4 (225-261)||(52485681-52485717)
chr4 (207-262)||(12292937-12292992)
chr4 (225-259)||(43913431-43913465)
[»] chr3 (16 HSPs)
chr3 (207-351)||(19540872-19541016)
chr3 (214-366)||(54341258-54341408)
chr3 (214-353)||(48618535-48618674)
chr3 (207-366)||(33419748-33419906)
chr3 (216-303)||(33419597-33419684)
chr3 (207-342)||(37285779-37285912)
chr3 (214-309)||(7015590-7015685)
chr3 (205-284)||(33241892-33241971)
chr3 (367-446)||(33419639-33419718)
chr3 (214-281)||(51388049-51388116)
chr3 (224-280)||(39639849-39639905)
chr3 (216-293)||(7015394-7015471)
chr3 (214-263)||(30547793-30547842)
chr3 (224-264)||(37285884-37285924)
chr3 (245-364)||(30547940-30548058)
chr3 (225-265)||(51388094-51388134)
[»] chr1 (32 HSPs)
chr1 (205-364)||(19987380-19987538)
chr1 (207-364)||(22792338-22792495)
chr1 (214-364)||(35795524-35795674)
chr1 (214-352)||(31872820-31872957)
chr1 (214-364)||(48171644-48171794)
chr1 (207-364)||(142859-143016)
chr1 (207-364)||(33459943-33460099)
chr1 (239-353)||(25622659-25622773)
chr1 (207-311)||(8718457-8718561)
chr1 (216-348)||(34518179-34518310)
chr1 (207-342)||(3073026-3073161)
chr1 (224-346)||(14419856-14419971)
chr1 (216-348)||(42604687-42604818)
chr1 (200-303)||(19987602-19987704)
chr1 (217-303)||(143082-143168)
chr1 (207-364)||(13189201-13189357)
chr1 (245-348)||(18519544-18519645)
chr1 (216-292)||(37245694-37245770)
chr1 (216-293)||(30971909-30971984)
chr1 (207-303)||(18519365-18519461)
chr1 (215-303)||(22792546-22792634)
chr1 (214-293)||(3075199-3075278)
chr1 (252-353)||(36783295-36783394)
chr1 (224-263)||(13189189-13189228)
chr1 (367-446)||(22792512-22792591)
chr1 (214-284)||(34518019-34518089)
chr1 (215-293)||(42604908-42604986)
chr1 (222-263)||(22792324-22792365)
chr1 (229-298)||(31872749-31872818)
chr1 (216-272)||(6043502-6043558)
chr1 (214-262)||(30971878-30971926)
chr1 (225-265)||(37245674-37245714)
[»] chr2 (24 HSPs)
chr2 (214-364)||(6795380-6795529)
chr2 (214-364)||(29526802-29526951)
chr2 (216-366)||(44995267-44995415)
chr2 (214-348)||(13490229-13490362)
chr2 (207-341)||(24284030-24284164)
chr2 (209-298)||(15988523-15988612)
chr2 (217-353)||(6412522-6412657)
chr2 (225-364)||(13140499-13140638)
chr2 (224-303)||(1353100-1353179)
chr2 (222-341)||(14473540-14473659)
chr2 (207-293)||(26845459-26845546)
chr2 (214-342)||(27956780-27956906)
chr2 (214-366)||(32622396-32622546)
chr2 (214-364)||(43971720-43971871)
chr2 (361-448)||(1352929-1353016)
chr2 (214-291)||(13490454-13490530)
chr2 (214-359)||(38262744-38262889)
chr2 (207-303)||(14473798-14473894)
chr2 (207-298)||(1352880-1352971)
chr2 (207-293)||(3221105-3221191)
chr2 (402-448)||(15988519-15988565)
chr2 (369-417)||(13140421-13140469)
chr2 (207-303)||(24015859-24015955)
chr2 (214-242)||(39060363-39060391)
[»] chr7 (14 HSPs)
chr7 (214-364)||(6376421-6376571)
chr7 (216-364)||(34535892-34536039)
chr7 (207-347)||(48462018-48462157)
chr7 (214-301)||(36469805-36469892)
chr7 (212-303)||(34535744-34535835)
chr7 (214-291)||(48461847-48461924)
chr7 (207-342)||(22566351-22566483)
chr7 (207-298)||(8560677-8560768)
chr7 (224-298)||(24188172-24188246)
chr7 (367-448)||(34535788-34535869)
chr7 (207-339)||(7460619-7460750)
chr7 (225-263)||(34536021-34536059)
chr7 (214-327)||(24185724-24185836)
chr7 (241-325)||(6528184-6528268)
[»] scaffold0056 (2 HSPs)
scaffold0056 (214-366)||(62931-63081)
scaffold0056 (214-303)||(62781-62870)
[»] chr5 (7 HSPs)
chr5 (224-364)||(16642953-16643093)
chr5 (214-284)||(34065280-34065350)
chr5 (207-341)||(33992383-33992516)
chr5 (209-303)||(32291063-32291157)
chr5 (207-284)||(25508092-25508169)
chr5 (225-285)||(19935716-19935776)
chr5 (214-293)||(33992614-33992693)
[»] chr8 (31 HSPs)
chr8 (218-339)||(25879789-25879908)
chr8 (207-364)||(16049688-16049842)
chr8 (214-366)||(34439431-34439581)
chr8 (361-446)||(16049579-16049664)
chr8 (217-353)||(32665767-32665902)
chr8 (216-353)||(9081230-9081365)
chr8 (216-337)||(7645019-7645139)
chr8 (207-303)||(4623117-4623213)
chr8 (207-283)||(9710264-9710340)
chr8 (214-298)||(34687809-34687893)
chr8 (229-303)||(18429483-18429557)
chr8 (207-281)||(18935101-18935175)
chr8 (374-446)||(4623168-4623240)
chr8 (253-341)||(7535356-7535444)
chr8 (368-448)||(18548635-18548715)
chr8 (214-281)||(18429614-18429681)
chr8 (215-293)||(21446041-21446117)
chr8 (209-298)||(16049530-16049619)
chr8 (369-448)||(7644876-7644955)
chr8 (208-298)||(7535527-7535617)
chr8 (216-364)||(18548744-18548889)
chr8 (214-303)||(25879622-25879711)
chr8 (368-448)||(7535489-7535569)
chr8 (207-303)||(7644827-7644923)
chr8 (222-321)||(23871161-23871260)
chr8 (214-348)||(4623297-4623429)
chr8 (207-293)||(18935327-18935413)
chr8 (225-265)||(7644816-7644856)
chr8 (229-265)||(16049813-16049849)
chr8 (374-446)||(18429512-18429584)
chr8 (215-303)||(34439278-34439366)
[»] chr6 (20 HSPs)
chr6 (214-364)||(32629259-32629408)
chr6 (207-366)||(6611659-6611817)
chr6 (214-340)||(13498310-13498435)
chr6 (246-359)||(17343097-17343210)
chr6 (215-303)||(10567519-10567607)
chr6 (214-366)||(10567669-10567819)
chr6 (222-364)||(34829615-34829756)
chr6 (224-364)||(29675077-29675218)
chr6 (207-293)||(22793349-22793435)
chr6 (225-303)||(28613232-28613310)
chr6 (361-446)||(10567562-10567647)
chr6 (214-341)||(28613400-28613524)
chr6 (215-271)||(29674933-29674989)
chr6 (207-341)||(11121946-11122080)
chr6 (214-281)||(32629118-32629185)
chr6 (224-298)||(6273653-6273727)
chr6 (224-293)||(22793575-22793644)
chr6 (207-263)||(6611946-6612002)
chr6 (214-278)||(18972525-18972589)
chr6 (214-298)||(34829829-34829913)
[»] scaffold0548 (1 HSPs)
scaffold0548 (207-347)||(3257-3396)
[»] scaffold0400 (1 HSPs)
scaffold0400 (214-334)||(9811-9930)
[»] scaffold0365 (1 HSPs)
scaffold0365 (214-334)||(10454-10573)


Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 200 - 446
Target Start/End: Complemental strand, 54702361 - 54702115
Alignment:
Q  200 agttggttcccttctgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtct 299  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54702361 agttggttcccttctgttttaaaagttttaagttggtcccttatgttttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtct 54702262  T
Q  300 cttcggtcacttaaccgtttaaagattcgggttgacaatatggatgatggaattcaacttgtttaaattttttattttattatacttaatatcatgtcgc 399  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  54702261 cttccgtcacttaaccgtttagagattcgggttgacaatatggatgatgaaattcaacttatttaaattttttattttattatacttaatatcatgtcgc 54702162  T
Q  400 ataagggattaacttatttcaatgtgggtaatattttggaccaactt 446  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  54702161 ataagggattaacttatttcaatgtgggtaatattttggaccaactt 54702115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 214 - 352
Target Start/End: Complemental strand, 4592713 - 4592575
Alignment:
Q  214 tgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaa 313  Q
    |||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||| ||||||||||||||||||| | |||||||||  |||||| |    
T  4592713 tgttttaaaagttttaagttggtcccttatgttttaacagtttcaagttggttcaaaacgttactcacattagaataaattagtctcttctatcacttga 4592614  T
Q  314 ccgtttaaagattcgggttgacaatatggatgatggaat 352  Q
    |||| |||||||||||||||||||||||  |||||||||    
T  4592613 ccgtgtaaagattcgggttgacaatatgagtgatggaat 4592575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 214 - 364
Target Start/End: Original strand, 49983848 - 49983998
Alignment:
Q  214 tgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaa 313  Q
    |||||||||||||| ||||||||||||||| |||||| | |||||||||| ||||||| |||||||||||| |||||||| ||||  ||| ||||||| |    
T  49983848 tgttttaaaagtttgaagttggtcccttatgttttaaaaattttaagttggttcaaaacgttactcacatttgaataagttagtccattccgtcacttga 49983947  T
Q  314 ccgtttaaagattcgggttgacaatatggatgatggaattcaacttgttta 364  Q
     || | ||||||| ||||||||||| ||  || ||||||| ||||| ||||    
T  49983948 tcggtcaaagatttgggttgacaatgtgagtggtggaatttaacttattta 49983998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 207 - 347
Target Start/End: Complemental strand, 11306618 - 11306479
Alignment:
Q  207 tcccttctgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggt 306  Q
    |||||| |||||||||||||| ||||||||||||||  |||||| ||||| |||||| | ||||| ||||||||| || |||||||| |||| |||| ||    
T  11306618 tcccttatgttttaaaagtttcaagttggtcccttacgttttaaaagtttcaagttggtccaaaacgttactcactttggaataagttagtcccttctgt 11306519  T
Q  307 cacttaaccgtttaaagattcgggttgacaatatggatgat 347  Q
    |||||||  ||||| ||||| ||||||||||||||| ||||    
T  11306518 cacttaa-tgtttatagatttgggttgacaatatgggtgat 11306479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 207 - 366
Target Start/End: Complemental strand, 48846078 - 48845920
Alignment:
Q  207 tcccttctgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggt 306  Q
    |||||| |||||||||||||||||| |||| |||||| |||||| ||||| ||||||    |||| ||||||||| || |||||| | ||||||||| ||    
T  48846078 tcccttatgttttaaaagttttaagatggtgccttatgttttaaaagtttcaagttggactaaaacgttactcacgttggaataaattagtctcttcagt 48845979  T
Q  307 cacttaaccgtttaaagattcgggttgacaatatggatgatggaattcaacttgtttaaa 366  Q
    ||||||| || ||||||||||||||||| ||||||| ||||| || | ||||| ||||||    
T  48845978 cacttaa-cgattaaagattcgggttgagaatatgggtgatgaaacttaacttatttaaa 48845920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 217 - 366
Target Start/End: Original strand, 37724497 - 37724644
Alignment:
Q  217 tttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaaccg 316  Q
    ||||||||||| |||||||||||||| ||||||| | ||| || ||| | ||||| ||||||||  || |||||||| ||||||||| |||||||||       
T  37724497 tttaaaagtttcaagttggtcccttacattttaaaattttcaaattggtccaaaacgttactcatgttggaataagttagtctcttccgtcacttaa--a 37724594  T
Q  317 tttaaagattcgggttgacaatatggatgatggaattcaacttgtttaaa 366  Q
    ||||||||| | ||||||||||||||||||||||| | ||||| ||||||    
T  37724595 tttaaagatccaggttgacaatatggatgatggaacttaacttatttaaa 37724644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 207 - 348
Target Start/End: Complemental strand, 52485706 - 52485566
Alignment:
Q  207 tcccttctgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggt 306  Q
    |||||| | ||||||||||||||||| |||| |||| ||||||| ||||| |||| | | |||||| |||||||| ||||||||| | |||| |||| ||    
T  52485706 tcccttatattttaaaagttttaagtgggtctcttacattttaaaagtttcaagtcggtccaaaatattactcacgttagaataaattagtcccttcagt 52485607  T
Q  307 cacttaaccgtttaaagattcgggttgacaatatggatgatg 348  Q
    || |||| ||||||||||||| |||||||||||||| |||||    
T  52485606 catttaa-cgtttaaagattcaggttgacaatatgggtgatg 52485566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 214 - 359
Target Start/End: Original strand, 2515744 - 2515893
Alignment:
Q  214 tgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaa 313  Q
    |||||||||||||| ||| |||||| |||| ||||| || ||| |||||| ||||||| |||||||||||||||||||||||||| ||||  ||| || |    
T  2515744 tgttttaaaagtttcaagctggtcctttatgttttaccaatttcaagttggttcaaaacgttactcacattagaataagtcagtcccttccatcaattga 2515843  T
Q  314 ccgtttaaagattcgggttg----acaatatggatgatggaattcaactt 359  Q
     | ||||||||||| |||||    ||||||||| |||||||||| |||||    
T  2515844 tcatttaaagattcaggttgacaaacaatatgggtgatggaatttaactt 2515893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 207 - 303
Target Start/End: Complemental strand, 4416842 - 4416746
Alignment:
Q  207 tcccttctgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttc 303  Q
    |||||| |||||||||| |||||||||||||||||| ||||||| |||||||||||| | ||||| |||||||||||| |||||||| |||| ||||    
T  4416842 tcccttatgttttaaaaattttaagttggtcccttacattttaaaagttttaagttggtccaaaacgttactcacattggaataagttagtcccttc 4416746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 216 - 348
Target Start/End: Complemental strand, 17524559 - 17524428
Alignment:
Q  216 ttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaacc 315  Q
    |||||||||||| |||||| |||||||| |||||| ||||||||||||   ||||| |||||| || || |||||||| |||| |||| ||||||||| |    
T  17524559 ttttaaaagtttcaagttgatcccttatgttttaaaagttttaagttggaccaaaacgttacttacgttggaataagttagtcccttcagtcacttaa-c 17524461  T
Q  316 gtttaaagattcgggttgacaatatggatgatg 348  Q
     |||||||||||||| ||||||||||| |||||    
T  17524460 atttaaagattcgggctgacaatatgggtgatg 17524428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 215 - 342
Target Start/End: Original strand, 20870883 - 20871010
Alignment:
Q  215 gttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaac 314  Q
    ||||||||||||||||||||||||||||  |||||| ||||| |||||  | ||||| |||||||||||| |||||||| |||| |||| |||||||||     
T  20870883 gttttaaaagttttaagttggtcccttacgttttaaaagtttcaagtttgtccaaaacgttactcacattggaataagttagtcccttccgtcacttaa- 20870981  T
Q  315 cgtttaaag-attcgggttgacaatatgg 342  Q
    |||||||||  || |||||||||||||||    
T  20870982 cgtttaaagttttggggttgacaatatgg 20871010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 207 - 303
Target Start/End: Complemental strand, 45505424 - 45505328
Alignment:
Q  207 tcccttctgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttc 303  Q
    |||||| |||||||||||||| ||||||||||||||  |||||| ||||| |||||| | ||||| ||||||||||||||||||||| |||||||||    
T  45505424 tcccttatgttttaaaagtttcaagttggtcccttacgttttaaaagtttcaagttggtccaaaacgttactcacattagaataagttagtctcttc 45505328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 207 - 303
Target Start/End: Original strand, 18414770 - 18414866
Alignment:
Q  207 tcccttctgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttc 303  Q
    |||||| |||||||||||||| |||||||||||||| ||||||| | ||| |||||| ||||||| ||||||||| || |||||||| |||||||||    
T  18414770 tcccttatgttttaaaagtttcaagttggtcccttacattttaaaaatttcaagttggttcaaaacgttactcacgttggaataagttagtctcttc 18414866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 207 - 348
Target Start/End: Original strand, 4416524 - 4416663
Alignment:
Q  207 tcccttctgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggt 306  Q
    |||||| |||||||||||||| |||||||||| |||  |||||| ||||| |||||| | ||||| ||||||||| || |||||||| |||| |||| ||    
T  4416524 tcccttatgttttaaaagtttcaagttggtcctttacgttttaaaagtttcaagttggtccaaaacgttactcacgttggaataagttagtcccttcagt 4416623  T
Q  307 cacttaaccgtttaaagattcgggttgacaatatggatgatg 348  Q
    |||||||  |||| ||||||| |||| ||||||||| |||||    
T  4416624 cacttaa-tgtttgaagattc-ggtttacaatatgggtgatg 4416663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 214 - 338
Target Start/End: Complemental strand, 18415044 - 18414922
Alignment:
Q  214 tgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaa 313  Q
    |||||||||||||| |||||||||||||   |||||| ||||| |||||| | ||||| ||||||||| ||  ||||||| ||||||||| |||||||||    
T  18415044 tgttttaaaagtttcaagttggtcccttgcgttttaaaagtttcaagttggtccaaaacgttactcacgttgaaataagttagtctcttctgtcacttaa 18414945  T
Q  314 ccgtttaaagattcgggttgacaat 338  Q
       ||||||||||||||||| ||||    
T  18414944 --atttaaagattcgggttgtcaat 18414922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 214 - 351
Target Start/End: Original strand, 45505114 - 45505250
Alignment:
Q  214 tgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaa 313  Q
    |||||||||||||| | |||||| |||||  |||||| ||||| |||||| | ||||| | ||||||| || |||||| | |||| ||||  ||||||||    
T  45505114 tgttttaaaagtttcatgttggttccttacgttttaaaagtttcaagttggtccaaaacgctactcacgttggaataaattagtcccttcaatcacttaa 45505213  T
Q  314 ccgtttaaagattcgggttgacaatatggatgatggaa 351  Q
     ||||||||||||| |||||||||||||| ||||||||    
T  45505214 -cgtttaaagattcaggttgacaatatgggtgatggaa 45505250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 225 - 364
Target Start/End: Original strand, 20268931 - 20269070
Alignment:
Q  225 ttttaagttggtcccttatatttt-aacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaaccgtttaaag 323  Q
    ||||||||||||||||||| |||| || ||||| |||||| ||||||| ||||||||||||  ||||||| |||||||||  | ||||   |||||||||    
T  20268931 ttttaagttggtcccttatgtttttaaaagtttcaagttggttcaaaacgttactcacattgaaataagttagtctcttccataactt-gtcgtttaaag 20269029  T
Q  324 attcgggttgacaatatggatgatggaattcaacttgttta 364  Q
    || |||||||||||||||  ||||| |||| ||||| ||||    
T  20269030 atccgggttgacaatatgagtgatgaaatttaacttattta 20269070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 207 - 350
Target Start/End: Original strand, 16398962 - 16399104
Alignment:
Q  207 tcccttctgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggt 306  Q
    |||||| |||||||||||||||||||||||   |||| |||||||| |||||| |||  ||||||||||| |||| ||||||||||| |||   ||| ||    
T  16398962 tcccttttgttttaaaagttttaagttggtttattatgttttaacacttttaaattg-gtcaaaatgttattcacgttagaataagttagttcattccgt 16399060  T
Q  307 cacttaaccgtttaaagattcgggttgacaatatggatgatgga 350  Q
    ||||| |||||||||||| || ||||   |||||| ||||||||    
T  16399061 cacttgaccgtttaaagactcaggttacaaatatgaatgatgga 16399104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 208 - 299
Target Start/End: Original strand, 48845761 - 48845852
Alignment:
Q  208 cccttctgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtct 299  Q
    ||||| |||||||||||||| ||||||||||||||  |||||| | |||||||||| | ||||||||||||||||||  ||||||| |||||    
T  48845761 cccttatgttttaaaagtttcaagttggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacattgaaataagttagtct 48845852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 367 - 448
Target Start/End: Complemental strand, 48845890 - 48845809
Alignment:
Q  367 ttttttattttattatacttaatatcatgtcgcataagggattaacttatttcaatgtgggtaatattttggaccaacttaa 448  Q
    |||||| |||||||| ||| |||||||||||||| ||  || ||||||||||||||||| |||| |||||||||||||||||    
T  48845890 ttttttgttttattaaactcaatatcatgtcgcagaaaagactaacttatttcaatgtgagtaacattttggaccaacttaa 48845809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 207 - 298
Target Start/End: Original strand, 17524252 - 17524343
Alignment:
Q  207 tcccttctgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtc 298  Q
    |||||| |||||||||||||| |||||| || ||||| |||||| ||||| || ||||| ||||| |||||||||||| |||||||| ||||    
T  17524252 tcccttatgttttaaaagtttcaagttgatctcttatgttttaaaagtttcaaattgatccaaaacgttactcacattggaataagttagtc 17524343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 214 - 281
Target Start/End: Original strand, 46397361 - 46397428
Alignment:
Q  214 tgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcac 281  Q
    |||||||||||||| ||||||||||||||  |||||| |||||||||||| | ||||| |||||||||    
T  46397361 tgttttaaaagtttcaagttggtcccttacgttttaaaagttttaagttggtccaaaacgttactcac 46397428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 216 - 263
Target Start/End: Complemental strand, 48658388 - 48658341
Alignment:
Q  216 ttttaaaagttttaagttggtcccttatattttaacagttttaagttg 263  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  48658388 ttttaaaagttttaagttggtcccttagattttaaaagttttaagttg 48658341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 303
Target Start/End: Complemental strand, 49984161 - 49984067
Alignment:
Q  209 ccttctgttttaaaagttttaagttggtcccttatattttaacagtttt-aagttgattcaaaatgttactcacattagaataagtcagtctcttc 303  Q
    |||| |||||||||||||| ||||||||||||||| |||||| |||||| |||||| | ||||| ||||||||| || |||||||| |||| ||||    
T  49984161 ccttatgttttaaaagtttcaagttggtcccttatgttttaa-agttttcaagttggtccaaaacgttactcacgttggaataagttagtcccttc 49984067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 213 - 303
Target Start/End: Original strand, 21376103 - 21376193
Alignment:
Q  213 ctgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttc 303  Q
    |||||| |||| |||||||||| ||||||||||||||| ||||| |||||| ||||||||| ||  ||||||  ||||||| |||| ||||    
T  21376103 ctgtttcaaaatttttaagttgatcccttatattttaaaagtttcaagttggttcaaaatggtatacacattgaaataagttagtcacttc 21376193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 207 - 289
Target Start/End: Original strand, 43913442 - 43913524
Alignment:
Q  207 tcccttctgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaat 289  Q
    |||||| | ||||||||||||||| ||||||  |||  |||||| ||||| |||||||| ||||| |||||||||||||||||    
T  43913442 tcccttatattttaaaagttttaaattggtcttttacgttttaaaagtttcaagttgatccaaaacgttactcacattagaat 43913524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 225 - 299
Target Start/End: Original strand, 45170692 - 45170766
Alignment:
Q  225 ttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtct 299  Q
    ||||||||||||||||||  |||||| ||||| |||||| | ||||||||||||||| || |||||||| |||||    
T  45170692 ttttaagttggtcccttaggttttaaaagtttcaagttggtccaaaatgttactcacgttggaataagttagtct 45170766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 367 - 448
Target Start/End: Original strand, 4416712 - 4416793
Alignment:
Q  367 ttttttattttattatacttaatatcatgtcgcataagggattaacttatttcaatgtgggtaatattttggaccaacttaa 448  Q
    |||||| |||||||| ||| ||||||||||||   |||||| ||||||||| ||||||| ||||  ||||||||||||||||    
T  4416712 ttttttgttttattaaactcaatatcatgtcgtggaagggactaacttattccaatgtgagtaacgttttggaccaacttaa 4416793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 367 - 440
Target Start/End: Complemental strand, 52485520 - 52485447
Alignment:
Q  367 ttttttattttattatacttaatatcatgtcgcataagggattaacttatttcaatgtgggtaatattttggac 440  Q
    |||||| |||||||| ||| |||||||||||||  ||| |||||||||||||||||||  ||||| ||||||||    
T  52485520 ttttttgttttattaaactcaatatcatgtcgcggaagagattaacttatttcaatgtcagtaatgttttggac 52485447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 68 - 149
Target Start/End: Complemental strand, 54702493 - 54702412
Alignment:
Q  68 tgtactacgagcttccattgagaaccaacccacgacacgatggtggatttttcgctcataagaaaattataatctgttctag 149  Q
    |||||||||||||||||||||||| ||| ||| |||| |||| |||| | |||| | | ||||||| |||||| ||||||||    
T  54702493 tgtactacgagcttccattgagaaacaagccatgacatgatgatggagtattcgtttagaagaaaaatataatttgttctag 54702412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 439
Target Start/End: Complemental strand, 17524374 - 17524310
Alignment:
Q  375 tttattatacttaatatcatgtcgcataagggattaacttatttcaatgtgggtaatattttgga 439  Q
    ||||||| ||| ||||||||||||||||| ||| ||||||||| ||||||| ||||  |||||||    
T  17524374 tttattaaactcaatatcatgtcgcataatggactaacttattccaatgtgagtaacgttttgga 17524310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 225 - 261
Target Start/End: Complemental strand, 52485717 - 52485681
Alignment:
Q  225 ttttaagttggtcccttatattttaacagttttaagt 261  Q
    |||||||||||||||||||||||||| ||||||||||    
T  52485717 ttttaagttggtcccttatattttaaaagttttaagt 52485681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 262
Target Start/End: Original strand, 12292937 - 12292992
Alignment:
Q  207 tcccttctgttttaaaagttttaagttggtcccttatattttaacagttttaagtt 262  Q
    |||||| |||||||||||||| |||||||| |||||| |||||| | |||||||||    
T  12292937 tcccttttgttttaaaagtttcaagttggtaccttatgttttaaaaattttaagtt 12292992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 259
Target Start/End: Original strand, 43913431 - 43913465
Alignment:
Q  225 ttttaagttggtcccttatattttaacagttttaa 259  Q
    |||||||||||||||||||||||||| ||||||||    
T  43913431 ttttaagttggtcccttatattttaaaagttttaa 43913465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 6e-38; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 207 - 351
Target Start/End: Original strand, 19540872 - 19541016
Alignment:
Q  207 tcccttctgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggt 306  Q
    |||||| |||||||||||||||| |||||||| |||| ||||||||||||||| ||| ||||||| ||||||||||||||||||||| |||   ||  ||    
T  19540872 tcccttatgttttaaaagttttatgttggtcctttatgttttaacagttttaaattggttcaaaacgttactcacattagaataagttagttcattttgt 19540971  T
Q  307 cacttaaccgtttaaagattcgggttgacaatatggatgatggaa 351  Q
    ||||| ||||||||||||||| |||||||||||||| ||||||||    
T  19540972 cacttgaccgtttaaagattcaggttgacaatatgggtgatggaa 19541016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 214 - 366
Target Start/End: Original strand, 54341258 - 54341408
Alignment:
Q  214 tgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaa 313  Q
    |||||||||||||||||||||||||||||  |||||| ||||| |||||| | ||||| ||||||||| || |||||||||||||||||| |||||||||    
T  54341258 tgttttaaaagttttaagttggtcccttacgttttaaaagtttcaagttggtccaaaacgttactcacgttggaataagtcagtctcttccgtcacttaa 54341357  T
Q  314 ccgtttaaagattcgggttgacaatatggatgatggaattcaacttgtttaaa 366  Q
       ||||||||| | |||||||||||||| |||||||| | ||||| ||||||    
T  54341358 --atttaaagatccaggttgacaatatgggtgatggaacttaacttatttaaa 54341408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 214 - 353
Target Start/End: Original strand, 48618535 - 48618674
Alignment:
Q  214 tgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaa 313  Q
    ||||||||||||||||| ||||| |||||| |||||||| ||| |||||| ||||||| ||||||||||||||||||||| |  | |||  ||||||| |    
T  48618535 tgttttaaaagttttaaattggttccttatgttttaacaatttcaagttggttcaaaacgttactcacattagaataagttaaccccttttgtcacttga 48618634  T
Q  314 ccgtttaaagattcgggttgacaatatggatgatggaatt 353  Q
      ||||||||||| |||| |||||||||| ||||| ||||    
T  48618635 ttgtttaaagatttgggtcgacaatatgggtgatgaaatt 48618674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 207 - 366
Target Start/End: Complemental strand, 33419906 - 33419748
Alignment:
Q  207 tcccttctgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggt 306  Q
    |||||| |||||||||||||| ||| ||||||||||  |||||| ||||||||||||    |||| ||||||||| || |||||| | ||||||||| ||    
T  33419906 tcccttatgttttaaaagtttcaagatggtcccttacgttttaaaagttttaagttggactaaaacgttactcacgttggaataaattagtctcttcagt 33419807  T
Q  307 cacttaaccgtttaaagattcgggttgacaatatggatgatggaattcaacttgtttaaa 366  Q
    ||||||| || |||||||||||||||||  |||||| ||||| || | ||||| ||||||    
T  33419806 cacttaa-cgattaaagattcgggttgaggatatgggtgatgaaacttaacttatttaaa 33419748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 216 - 303
Target Start/End: Original strand, 33419597 - 33419684
Alignment:
Q  216 ttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttc 303  Q
    |||||||||||||||||||||||||||  |||||| ||||| |||||| | ||||| ||||||||||||  ||||||| |||||||||    
T  33419597 ttttaaaagttttaagttggtcccttacgttttaaaagtttcaagttggtccaaaacgttactcacattgaaataagttagtctcttc 33419684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 207 - 342
Target Start/End: Complemental strand, 37285912 - 37285779
Alignment:
Q  207 tcccttctgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggt 306  Q
    |||||| | |||||||||||| ||||||  || ||||||||||| | ||| |||||| ||||||| ||||||||||||  ||||||| |||  | || ||    
T  37285912 tcccttatattttaaaagtttcaagttgaccctttatattttaaaaatttcaagttggttcaaaacgttactcacattgaaataagttagt-gcctccgt 37285814  T
Q  307 cacttaaccgtttaaagattcgggttgacaatatgg 342  Q
    |||||||||||| |||||||  ||||||||||||||    
T  37285813 cacttaaccgttaaaagatt-tggttgacaatatgg 37285779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 214 - 309
Target Start/End: Complemental strand, 7015685 - 7015590
Alignment:
Q  214 tgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcac 309  Q
    |||||||||| ||||||||||| || ||||||||| | |||||||||||  |  ||||||||||| || || |||||||| ||||||||| |||||    
T  7015685 tgttttaaaaattttaagttggccctttatattttgaaagttttaagtttgtctaaaatgttacttacgttggaataagttagtctcttccgtcac 7015590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 33241892 - 33241971
Alignment:
Q  205 gttcccttctgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacatt 284  Q
    |||||||| ||||||||||||||||| ||||| ||||||||||||| ||||| || ||| | ||||| |||| |||||||    
T  33241892 gttcccttatgttttaaaagttttaatttggttccttatattttaaaagtttcaaattggtccaaaacgttagtcacatt 33241971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 367 - 446
Target Start/End: Complemental strand, 33419718 - 33419639
Alignment:
Q  367 ttttttattttattatacttaatatcatgtcgcataagggattaacttatttcaatgtgggtaatattttggaccaactt 446  Q
    |||||| |||||||| ||| |||||||||||||  ||| || ||||||||||||||||| ||||  ||||||||||||||    
T  33419718 ttttttgttttattaaactcaatatcatgtcgcggaagagactaacttatttcaatgtgagtaacgttttggaccaactt 33419639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 214 - 281
Target Start/End: Complemental strand, 51388116 - 51388049
Alignment:
Q  214 tgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcac 281  Q
    ||||||||||||||||||||| ||||||| ||||||| |||||||| ||| | ||||| |||||||||    
T  51388116 tgttttaaaagttttaagttgatcccttacattttaaaagttttaaattggtccaaaacgttactcac 51388049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 280
Target Start/End: Complemental strand, 39639905 - 39639849
Alignment:
Q  224 gttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactca 280  Q
    ||||||||||||||||||||||||||| ||||  || ||||| ||||||||||||||    
T  39639905 gttttaagttggtcccttatattttaaaagttacaaattgatccaaaatgttactca 39639849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 293
Target Start/End: Original strand, 7015394 - 7015471
Alignment:
Q  216 ttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagt 293  Q
    |||||||||||||||||||||||||||  |||||| |||||  | ||| | |||||  ||||||||| ||||||||||    
T  7015394 ttttaaaagttttaagttggtcccttaagttttaaaagtttcgatttggtccaaaacattactcacactagaataagt 7015471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 30547793 - 30547842
Alignment:
Q  214 tgttttaaaagttttaagttggtcccttatattttaacagttttaagttg 263  Q
    |||||||||||||||||||||||||||||  ||||||  |||||||||||    
T  30547793 tgttttaaaagttttaagttggtcccttactttttaaaggttttaagttg 30547842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 264
Target Start/End: Complemental strand, 37285924 - 37285884
Alignment:
Q  224 gttttaagttggtcccttatattttaacagttttaagttga 264  Q
    ||||||||||||||||||||||||||| ||||| |||||||    
T  37285924 gttttaagttggtcccttatattttaaaagtttcaagttga 37285884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 364
Target Start/End: Complemental strand, 30548058 - 30547940
Alignment:
Q  245 ttttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaaccgtttaaagattcgggttgacaatatggat 344  Q
    |||||| ||||| |||||| | ||||| ||||||||  ||  ||||||| ||||  ||| ||||||| |||||||||||||||   |||||||||||| |    
T  30548058 ttttaaaagtttcaagttggtccaaaacgttactcatgttgaaataagttagtccattcagtcacttgaccgtttaaagattc-tattgacaatatgggt 30547960  T
Q  345 gatggaattcaacttgttta 364  Q
    |||| |||| ||||| ||||    
T  30547959 gatgaaatttaacttattta 30547940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 265
Target Start/End: Complemental strand, 51388134 - 51388094
Alignment:
Q  225 ttttaagttggtcccttatattttaacagttttaagttgat 265  Q
    ||||||||||||| ||||| |||||| ||||||||||||||    
T  51388134 ttttaagttggtctcttatgttttaaaagttttaagttgat 51388094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 6e-35; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 205 - 364
Target Start/End: Original strand, 19987380 - 19987538
Alignment:
Q  205 gttcccttctgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcg 304  Q
    ||||| || |||||||||||||||||||||||||||||  |||||| ||||| |||||||| ||||| |||||||||||| |||||||| |||| ||||     
T  19987380 gttcctttatgttttaaaagttttaagttggtcccttaagttttaaaagtttcaagttgatccaaaacgttactcacattggaataagttagtcccttca 19987479  T
Q  305 gtcacttaaccgtttaaagattcgggttgacaatatggatgatggaattcaacttgttta 364  Q
    |||| |||| ||||||||||||||||| ||| |||||| ||||| |||| ||||| ||||    
T  19987480 gtcatttaa-cgtttaaagattcgggtcgactatatgggtgatgaaatttaacttattta 19987538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 207 - 364
Target Start/End: Original strand, 22792338 - 22792495
Alignment:
Q  207 tcccttctgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggt 306  Q
    |||||| ||||||||||||||||||||||||| |||| |||||| ||||| | |||||||||||| |||||||| |||  ||||||| |||  |||| ||    
T  22792338 tcccttttgttttaaaagttttaagttggtccgttatgttttaaaagtttcatgttgattcaaaacgttactcatattgaaataagttagtaccttccgt 22792437  T
Q  307 cacttaaccgtttaaagattcgggttgacaatatggatgatggaattcaacttgttta 364  Q
    |||||  |||||||||| ||| |||||||||||||| |||||||||| ||||| ||||    
T  22792438 cacttggccgtttaaagtttcaggttgacaatatgggtgatggaatttaacttattta 22792495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 214 - 364
Target Start/End: Complemental strand, 35795674 - 35795524
Alignment:
Q  214 tgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaa 313  Q
    ||||||||||||||||| |||||||||||| |||||| ||||| |||||| ||||||| ||||||||||| ||||||||| |||||||||  ||||||      
T  35795674 tgttttaaaagttttaaattggtcccttatgttttaaaagtttcaagttggttcaaaacgttactcacataagaataagttagtctcttccatcacttgg 35795575  T
Q  314 ccgtttaaagattcgggttgacaatatggatgatggaattcaacttgttta 364  Q
      ||||||||||||| |||||||| |||  ||||| |||| ||||| ||||    
T  35795574 ttgtttaaagattcgagttgacaacatgagtgatgaaatttaacttattta 35795524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 214 - 352
Target Start/End: Complemental strand, 31872957 - 31872820
Alignment:
Q  214 tgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaa 313  Q
    |||||||||||||| ||||||||||||||  |||||| ||||| |||||| | ||||| ||||||||| || ||||||| ||||| ||||  ||||||||    
T  31872957 tgttttaaaagtttcaagttggtcccttacgttttaaaagtttcaagttggtccaaaacgttactcacgttggaataagccagtcccttcaatcacttaa 31872858  T
Q  314 ccgtttaaagattcgggttgacaatatggatgatggaat 352  Q
     | |||||| ||||||||||||||||||| |||||||||    
T  31872857 -catttaaatattcgggttgacaatatgggtgatggaat 31872820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 214 - 364
Target Start/End: Complemental strand, 48171794 - 48171644
Alignment:
Q  214 tgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaa 313  Q
    |||||||||||||| ||| || |||||||| |||||| ||||| |||||| ||||||| |||||||||||| |||||||| |||| |||| ||||||  |    
T  48171794 tgttttaaaagtttcaagctgttcccttatgttttaaaagtttcaagttggttcaaaacgttactcacatttgaataagttagtcccttccgtcactaga 48171695  T
Q  314 ccgtttaaagattcgggttgacaatatggatgatggaattcaacttgttta 364  Q
    |||| ||||||||  |||| ||||| ||| |||||||||| ||||| ||||    
T  48171694 ccgtataaagatttaggttaacaatgtgggtgatggaatttaacttattta 48171644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 207 - 364
Target Start/End: Original strand, 142859 - 143016
Alignment:
Q  207 tcccttctgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggt 306  Q
    |||||| |||||||||| ||| ||||||||||||||| |||||| ||||| || ||  || |||| |||||| ||||| || ||||| |||| ||||  |    
T  142859 tcccttgtgttttaaaattttcaagttggtcccttatgttttaaaagtttcaaatttgtttaaaacgttacttacattggagtaagttagtcccttctat 142958  T
Q  307 cacttaaccgtttaaagattcgggttgacaatatggatgatggaattcaacttgttta 364  Q
    ||||| || ||||||||||||||||||| ||||||||||||| |||| ||||| ||||    
T  142959 cacttgactgtttaaagattcgggttgaaaatatggatgatgaaatttaacttattta 143016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 207 - 364
Target Start/End: Original strand, 33459943 - 33460099
Alignment:
Q  207 tcccttctgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggt 306  Q
    |||||| |||||||||||||| |||||||||| |||  |||||| ||||| |||||| | ||||||||||| ||| ||| ||||| | |||| |||| ||    
T  33459943 tcccttatgttttaaaagtttcaagttggtcctttacgttttaaaagtttcaagttggtccaaaatgttacgcacgttataataaattagtcccttccgt 33460042  T
Q  307 cacttaaccgtttaaagattcgggttgacaatatggatgatggaattcaacttgttta 364  Q
    ||||||| |||||||||||| || |||||||||||| |||| ||| | ||||| ||||    
T  33460043 cacttaa-cgtttaaagatttggattgacaatatgggtgatagaacttaacttattta 33460099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 239 - 353
Target Start/End: Original strand, 25622659 - 25622773
Alignment:
Q  239 cttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaaccgtttaaagattcgggttgacaat 338  Q
    ||||| |||| | ||||| |||||| ||||||| |||||||||||| |||||||| |||||||||  |||||| |||| ||||||| ||||||| |||||    
T  25622659 cttatgttttgaaagtttcaagttggttcaaaacgttactcacattggaataagttagtctcttctctcacttgaccggttaaagaatcgggtttacaat 25622758  T
Q  339 atggatgatggaatt 353  Q
    |||| ||||||||||    
T  25622759 atgggtgatggaatt 25622773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 207 - 311
Target Start/End: Complemental strand, 8718561 - 8718457
Alignment:
Q  207 tcccttctgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggt 306  Q
    |||||| | |||||||||||| ||||| ||||||||| |||||| | ||| |||||| ||||||| |||||||||||| |||||||| ||||||||| ||    
T  8718561 tcccttattttttaaaagtttcaagtttgtcccttatgttttaaaattttcaagttggttcaaaacgttactcacattggaataagttagtctcttctgt 8718462  T
Q  307 cactt 311  Q
    |||||    
T  8718461 cactt 8718457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 216 - 348
Target Start/End: Complemental strand, 34518310 - 34518179
Alignment:
Q  216 ttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaacc 315  Q
    ||||||||||||||| |||||||||||  |||||| | ||| |||||| | ||||| ||||||||| ||||||||||| |||| || |  ||||||||      
T  34518310 ttttaaaagttttaaattggtcccttacgttttaaaaatttcaagttggtccaaaacgttactcacgttagaataagttagtccctccattcacttaa-t 34518212  T
Q  316 gtttaaagattcgggttgacaatatggatgatg 348  Q
    ||||||| ||||||||||||||||||| |||||    
T  34518211 gtttaaatattcgggttgacaatatgggtgatg 34518179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 207 - 342
Target Start/End: Original strand, 3073026 - 3073161
Alignment:
Q  207 tcccttctgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggt 306  Q
    |||||| |||||||||||||||||||||||| ||||  |||||| ||||| |||||| |  ||||||||| |||| || |||||||| |||| ||||  |    
T  3073026 tcccttgtgttttaaaagttttaagttggtctcttacgttttaaaagtttcaagttggtctaaaatgttattcacgttggaataagttagtcccttcaat 3073125  T
Q  307 cacttaaccgtttaaagattcgggttgacaatatgg 342  Q
    ||||||||  |||||| ||| | ||| |||||||||    
T  3073126 cacttaacgttttaaaaatttgagttaacaatatgg 3073161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 224 - 346
Target Start/End: Original strand, 14419856 - 14419971
Alignment:
Q  224 gttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaaccgtttaaag 323  Q
    |||||||||||||||||||| ||||||       |||||| |||||||  |||| ||| |  |||||||| ||||||||| ||||||| | |||||||||    
T  14419856 gttttaagttggtcccttatgttttaa-------aagttggttcaaaacattacccacgtcggaataagttagtctcttccgtcacttgatcgtttaaag 14419948  T
Q  324 attcgggttgacaatatggatga 346  Q
    ||||||||||||||||| |||||    
T  14419949 attcgggttgacaatattgatga 14419971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 216 - 348
Target Start/End: Original strand, 42604687 - 42604818
Alignment:
Q  216 ttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaacc 315  Q
    |||||||||||| |||||||||||||   |||||| ||||| |||||| |  |||| ||||||||| || |||||||| |||  ||||  ||| |||| |    
T  42604687 ttttaaaagtttcaagttggtccctttagttttaaaagtttcaagttggtctaaaacgttactcacgttggaataagttagttccttcaatcatttaa-c 42604785  T
Q  316 gtttaaagattcgggttgacaatatggatgatg 348  Q
    ||||||||||| ||||||||||||||| |||||    
T  42604786 gtttaaagattagggttgacaatatgggtgatg 42604818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 200 - 303
Target Start/End: Complemental strand, 19987704 - 19987602
Alignment:
Q  200 agttggttcccttctgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtct 299  Q
    |||||||||| || ||||||||||||||||  ||||||||| | ||||||| |||||||||||||| ||||| |||||| |||||  ||||||| | |||    
T  19987704 agttggttcc-ttgtgttttaaaagttttattttggtccctcacattttaaaagttttaagttgatccaaaacgttacttacattgtaataagttaatct 19987606  T
Q  300 cttc 303  Q
    ||||    
T  19987605 cttc 19987602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 217 - 303
Target Start/End: Complemental strand, 143168 - 143082
Alignment:
Q  217 tttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttc 303  Q
    ||||||||||||||||||||||||||  |||||| ||||| |||||| | ||||| ||||||||| ||  ||||||| |||||||||    
T  143168 tttaaaagttttaagttggtcccttacgttttaaaagtttcaagttggtccaaaacgttactcacgttgcaataagttagtctcttc 143082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 207 - 364
Target Start/End: Original strand, 13189201 - 13189357
Alignment:
Q  207 tcccttctgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggt 306  Q
    |||||| | ||||||||||||||||||||| | ||||||||||| ||| |  ||||| ||||||| ||||||| || |  ||||||| |||| |||  ||    
T  13189201 tcccttatattttaaaagttttaagttggtgctttatattttaaaagtatcgagttggttcaaaacgttactcgcaatgaaataagttagtc-ctttcgt 13189299  T
Q  307 cacttaaccgtttaaagattcgggttgacaatatggatgatggaattcaacttgttta 364  Q
    || || || |||||||||||| |||| ||||||| | ||||| |||| ||||| ||||    
T  13189300 cagttgactgtttaaagattcaggttcacaatataggtgatgtaatttaacttattta 13189357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 245 - 348
Target Start/End: Complemental strand, 18519645 - 18519544
Alignment:
Q  245 ttttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaaccgtttaaagattcgggttgacaatatggat 344  Q
    |||||| ||||| ||||||||  |||| ||||||||| || |||||||| ||||||||| |  ||||||   |||||||||||||||||||||||||| |    
T  18519645 ttttaaaagtttcaagttgatctaaaacgttactcacgttggaataagttagtctcttctgctacttaaa--tttaaagattcgggttgacaatatgggt 18519548  T
Q  345 gatg 348  Q
    ||||    
T  18519547 gatg 18519544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 216 - 292
Target Start/End: Original strand, 37245694 - 37245770
Alignment:
Q  216 ttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataag 292  Q
    |||||||||||| |||||| ||||||| ||||||| |||||||||||| | ||||| ||||||||| || |||||||    
T  37245694 ttttaaaagtttcaagttgatcccttacattttaaaagttttaagttggtccaaaacgttactcacgttggaataag 37245770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 216 - 293
Target Start/End: Original strand, 30971909 - 30971984
Alignment:
Q  216 ttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagt 293  Q
    |||||||||||||||||| || ||||| ||||||| |||||||||||| ||  ||| |||||||||||| ||||||||    
T  30971909 ttttaaaagttttaagttagtaccttacattttaaaagttttaagttggtt--aaacgttactcacatttgaataagt 30971984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 207 - 303
Target Start/End: Original strand, 18519365 - 18519461
Alignment:
Q  207 tcccttctgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttc 303  Q
    |||||| ||||||||| |||||||||||||||||||  |||||| | ||| ||||||||  |||| ||||||||| ||  ||||||| |||| ||||    
T  18519365 tcccttatgttttaaatgttttaagttggtcccttacgttttaaaaatttcaagttgatataaaacgttactcactttgaaataagttagtcccttc 18519461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 215 - 303
Target Start/End: Complemental strand, 22792634 - 22792546
Alignment:
Q  215 gttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttc 303  Q
    ||||||||||||||||||||||||||||  ||| ||  |||| |||||  | ||||| |||||||||||| |||||||| |||| ||||    
T  22792634 gttttaaaagttttaagttggtcccttacgtttgaaaggtttcaagttagtccaaaacgttactcacattggaataagttagtcgcttc 22792546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 293
Target Start/End: Complemental strand, 3075278 - 3075199
Alignment:
Q  214 tgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagt 293  Q
    |||||||||||||| |||||||||| |||  |||||| ||||| |||||  | ||||| |||||||||||| ||||||||    
T  3075278 tgttttaaaagtttcaagttggtccattacgttttaaaagtttcaagtttgtccaaaacgttactcacattggaataagt 3075199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 252 - 353
Target Start/End: Complemental strand, 36783394 - 36783295
Alignment:
Q  252 agttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaaccgtttaaagattcgggttgacaatatggatgatggaa 351  Q
    |||||||| ||| ||||||| ||| ||||||||  ||||||| |||| || |  ||||||||||||||||||||||  ||||| ||||||| ||||||||    
T  36783394 agttttaatttggttcaaaacgttgctcacattgtaataagttagtccctcca-tcacttaaccgtttaaagattc-agttgagaatatgggtgatggaa 36783297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 13189189 - 13189228
Alignment:
Q  224 gttttaagttggtcccttatattttaacagttttaagttg 263  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  13189189 gttttcagttggtcccttatattttaaaagttttaagttg 13189228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 446
Target Start/End: Original strand, 22792512 - 22792591
Alignment:
Q  367 ttttttattttattatacttaatatcatgtcgcataagggattaacttatttcaatgtgggtaatattttggaccaactt 446  Q
    |||||| |||||||| |||  ||||||||||||| ||| || ||||||||| ||||||| ||||  |||||||| |||||    
T  22792512 ttttttgttttattaaactcgatatcatgtcgcagaagcgactaacttattccaatgtgagtaacgttttggactaactt 22792591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 284
Target Start/End: Original strand, 34518019 - 34518089
Alignment:
Q  214 tgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacatt 284  Q
    |||||||| ||||| || | |||||| ||  |||||| |||||||||||| ||||||| ||||||||||||    
T  34518019 tgttttaacagtttcaactcggtcccctacgttttaaaagttttaagttggttcaaaacgttactcacatt 34518089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 293
Target Start/End: Complemental strand, 42604986 - 42604908
Alignment:
Q  215 gttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagt 293  Q
    ||||||||||||| ||||||||||||||  |||| | ||||| | |||| |  |||| |||||||||||| ||||||||    
T  42604986 gttttaaaagtttcaagttggtcccttacgtttttaaagtttcatgttggtcaaaaacgttactcacatttgaataagt 42604908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 263
Target Start/End: Original strand, 22792324 - 22792365
Alignment:
Q  222 aagttttaagttggtcccttatattttaacagttttaagttg 263  Q
    |||||||||||||||||||| | |||||| ||||||||||||    
T  22792324 aagttttaagttggtcccttttgttttaaaagttttaagttg 22792365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 298
Target Start/End: Original strand, 31872749 - 31872818
Alignment:
Q  229 aagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtc 298  Q
    ||||||||||||||  |||||| ||||| |||||| | ||||| ||||||||||||  ||||||| ||||    
T  31872749 aagttggtcccttacgttttaaaagtttcaagttggtccaaaacgttactcacattgaaataagttagtc 31872818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 272
Target Start/End: Original strand, 6043502 - 6043558
Alignment:
Q  216 ttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaat 272  Q
    ||||||| |||| ||||| |||| |||||||||||  ||||||||||||| ||||||    
T  6043502 ttttaaatgtttcaagtttgtccattatattttaattgttttaagttgatccaaaat 6043558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 262
Target Start/End: Original strand, 30971878 - 30971926
Alignment:
Q  214 tgttttaaaagttttaagttggtcccttatattttaacagttttaagtt 262  Q
    ||||||||||||||||||||  | ||||| ||||||| |||||||||||    
T  30971878 tgttttaaaagttttaagttattaccttacattttaaaagttttaagtt 30971926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 265
Target Start/End: Original strand, 37245674 - 37245714
Alignment:
Q  225 ttttaagttggtcccttatattttaacagttttaagttgat 265  Q
    ||||||||||||| |||||||||||| ||||| ||||||||    
T  37245674 ttttaagttggtctcttatattttaaaagtttcaagttgat 37245714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 214 - 364
Target Start/End: Complemental strand, 6795529 - 6795380
Alignment:
Q  214 tgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaa 313  Q
    |||||||||||||| |||||||||||| |  |||||| ||||| |||||| |||||||||||||| |||||| ||||||  ||||  ||| |||||||||    
T  6795529 tgttttaaaagtttaaagttggtccctaacgttttaaaagtttaaagttggttcaaaatgttactaacattataataagatagtcctttccgtcacttaa 6795430  T
Q  314 ccgtttaaagattcgggttgacaatatggatgatggaattcaacttgttta 364  Q
    ||||| |||||||| ||||||||||||||||||||||||| ||||| ||||    
T  6795429 ccgttgaaagattc-ggttgacaatatggatgatggaatttaacttattta 6795380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 214 - 364
Target Start/End: Complemental strand, 29526951 - 29526802
Alignment:
Q  214 tgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaa 313  Q
    |||||||||||||||||||||||||||||  |||||| ||||| |||||| | ||||| ||||||||| || |||||||| ||||||||| ||||| |||    
T  29526951 tgttttaaaagttttaagttggtcccttacgttttaaaagtttcaagttggtccaaaacgttactcacgttggaataagttagtctcttcagtcacgtaa 29526852  T
Q  314 ccgtttaaagattcgggttgacaatatggatgatggaattcaacttgttta 364  Q
     || |||||||| |||||||||||||||| |||||||| | ||||| ||||    
T  29526851 -cggttaaagatccgggttgacaatatgggtgatggaacttaacttattta 29526802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 216 - 366
Target Start/End: Complemental strand, 44995415 - 44995267
Alignment:
Q  216 ttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaacc 315  Q
    |||||||||||| ||||||||||||||  |||||| ||| | |||||| | ||||| ||||||||| || |||||||| ||||||||| |||||||||      
T  44995415 ttttaaaagtttcaagttggtcccttacgttttaaaagtatcaagttggtccaaaacgttactcacgttggaataagttagtctcttccgtcacttaa-- 44995318  T
Q  316 gtttaaagattcgggttgacaatatggatgatggaattcaacttgtttaaa 366  Q
     ||||||||||||||||||||||||||||| ||||| | ||||| ||||||    
T  44995317 atttaaagattcgggttgacaatatggatggtggaacttaacttatttaaa 44995267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 214 - 348
Target Start/End: Original strand, 13490229 - 13490362
Alignment:
Q  214 tgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaa 313  Q
    |||||||||||||||||||||||| ||||  |||||| |||||||||||| | ||||| ||||||||| || |||||||| |||| || | |||||||||    
T  13490229 tgttttaaaagttttaagttggtctcttacgttttaaaagttttaagttggtccaaaacgttactcacgttggaataagttagtccctccagtcacttaa 13490328  T
Q  314 ccgtttaaagattcgggttgacaatatggatgatg 348  Q
     ||||||||||| |  ||||||||||||| |||||    
T  13490329 -cgtttaaagatccatgttgacaatatgggtgatg 13490362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 207 - 341
Target Start/End: Complemental strand, 24284164 - 24284030
Alignment:
Q  207 tcccttctgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggt 306  Q
    |||||| |||||||||||||||||||| | | |||||||||||| ||||| |||||||  |||||  |||||||  ||| ||||||| |||  |||| ||    
T  24284164 tcccttatgttttaaaagttttaagtttgactcttatattttaaaagtttcaagttgacccaaaacattactcatcttaaaataagttagttccttccgt 24284065  T
Q  307 cacttaaccgtttaaagattcgggttgacaatatg 341  Q
    ||||| |||||||| ||||||||||||| ||||||    
T  24284064 cacttgaccgtttagagattcgggttgagaatatg 24284030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 209 - 298
Target Start/End: Complemental strand, 15988612 - 15988523
Alignment:
Q  209 ccttctgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtc 298  Q
    |||| |||||||||||||| |||||||||||||||||||||| |||||||||||| | |||||  ||||||||||| |||||||| ||||    
T  15988612 ccttatgttttaaaagtttcaagttggtcccttatattttaaaagttttaagttggtccaaaacattactcacattggaataagttagtc 15988523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 217 - 353
Target Start/End: Original strand, 6412522 - 6412657
Alignment:
Q  217 tttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaaccg 316  Q
    |||||||||||||| |||| ||||||| |||||| ||||| |||||| | |||||  ||| ||  ||| |||||||| ||| |||||  |||||||||||    
T  6412522 tttaaaagttttaaattggacccttatgttttaagagtttcaagttggtccaaaactttagtcg-attggaataagttagtatcttccttcacttaaccg 6412620  T
Q  317 tttaaagattcgggttgacaatatggatgatggaatt 353  Q
    |||||| |||||| |||||||||||||||||| ||||    
T  6412621 tttaaatattcggattgacaatatggatgatgaaatt 6412657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 225 - 364
Target Start/End: Complemental strand, 13140638 - 13140499
Alignment:
Q  225 ttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaaccgtttaaaga 324  Q
    |||||||||||||  ||||||||||| ||||| |||||| ||||| | ||||||||||||| ||||||| ||| |||||  |||||| || |||| ||||    
T  13140638 ttttaagttggtcatttatattttaaaagtttcaagttggttcaatacgttactcacattataataagttagtttcttctatcacttgactgtttgaaga 13140539  T
Q  325 ttcgggttgacaatatggatgatggaattcaacttgttta 364  Q
    |||| |  ||||||||||| |||| |||| ||||| ||||    
T  13140538 ttcgagccgacaatatggacgatgaaatttaacttattta 13140499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 224 - 303
Target Start/End: Complemental strand, 1353179 - 1353100
Alignment:
Q  224 gttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttc 303  Q
    |||||||||||||| ||||| |||||| ||||| |||||| | ||||||||||||||  ||||||||||| |||||||||    
T  1353179 gttttaagttggtctcttatgttttaaaagtttcaagttggtccaaaatgttactcatcttagaataagttagtctcttc 1353100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 222 - 341
Target Start/End: Original strand, 14473540 - 14473659
Alignment:
Q  222 aagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaaccgtttaa 321  Q
    ||||||| |||||||||||||| |||||| |||||||||||  | |||||||||| ||| ||| |||||||| |||| ||||  ||||||  |||||||     
T  14473540 aagttttgagttggtcccttatgttttaaaagttttaagtttgtccaaaatgttaatcatattggaataagttagtcccttccatcacttggccgtttag 14473639  T
Q  322 agattcgggttgacaatatg 341  Q
    ||||| ||| ||| ||||||    
T  14473640 agatttgggctgagaatatg 14473659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 207 - 293
Target Start/End: Complemental strand, 26845546 - 26845459
Alignment:
Q  207 tcccttctgttttaaaagttttaagttggtcccttatatttt-aacagttttaagttgattcaaaatgttactcacattagaataagt 293  Q
    |||||| |||||||||||||| |||||||||| |||| |||| |||||||| | |||| ||||||| |||||||||||||||| ||||    
T  26845546 tcccttatgttttaaaagtttcaagttggtcctttatgtttttaacagtttcatgttggttcaaaacgttactcacattagaacaagt 26845459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 214 - 342
Target Start/End: Original strand, 27956780 - 27956906
Alignment:
Q  214 tgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaa 313  Q
    ||||||||||||||||| |||||||||||  |||||| ||||| |||||| | |||||  |||| ||| || |||||||| ||| ||||| | |||||||    
T  27956780 tgttttaaaagttttaaattggtcccttacgttttaaaagtttcaagttggtccaaaacattacccacgttggaataagttagtttcttccgacacttaa 27956879  T
Q  314 ccgtttaaagattcgggttgacaatatgg 342  Q
       ||||||||| | ||||||||||||||    
T  27956880 --atttaaagatccaggttgacaatatgg 27956906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 214 - 366
Target Start/End: Complemental strand, 32622546 - 32622396
Alignment:
Q  214 tgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaa 313  Q
    |||||||||||||| |||||||||  |||  | |||| |||||||||||| | ||||| ||||||||| || |||||||| | ||||  | |||||||||    
T  32622546 tgttttaaaagtttgaagttggtcttttacgtattaaaagttttaagttggtccaaaacgttactcacgttggaataagttaatctcccccgtcacttaa 32622447  T
Q  314 ccgtttaaagattcgggttgacaatatggatgatggaattcaacttgtttaaa 366  Q
       ||| ||||| ||||||||||||||  ||||||||| | ||||| ||||||    
T  32622446 --atttgaagatccgggttgacaatataaatgatggaacttaacttatttaaa 32622396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 214 - 364
Target Start/End: Complemental strand, 43971871 - 43971720
Alignment:
Q  214 tgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattag-aataagtcagtctcttcggtcactta 312  Q
    |||||||||||||| ||||||||||||  | |||||| ||||| | |||| |||||| |||||||||| |||| ||||||| |||| ||||  |||||      
T  43971871 tgttttaaaagtttcaagttggtccctagtgttttaaaagtttcatgttggttcaaattgttactcacgttagaaataagttagtcccttctatcactag 43971772  T
Q  313 accgtttaaagattcgggttgacaatatggatgatggaattcaacttgttta 364  Q
    |  ||| ||||| ||| |||||| ||||| ||| ||||||| ||||| ||||    
T  43971771 aaggttcaaagactcgcgttgacgatatgcatggtggaatttaacttattta 43971720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 361 - 448
Target Start/End: Complemental strand, 1353016 - 1352929
Alignment:
Q  361 tttaaattttttattttattatacttaatatcatgtcgcataagggattaacttatttcaatgtgggtaatattttggaccaacttaa 448  Q
    ||||| |||||| | |||||| ||| |||||||||||||  |||||| ||||||||||||| |||  ||| ||||| |||||||||||    
T  1353016 tttaatttttttgtattattaaactcaatatcatgtcgctaaagggactaacttatttcaacgtgaataacattttagaccaacttaa 1352929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 214 - 291
Target Start/End: Complemental strand, 13490530 - 13490454
Alignment:
Q  214 tgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataa 291  Q
    ||||||||||| |||||||||||||||||   ||||| ||||| ||||||  || |||||||||||||||| ||||||    
T  13490530 tgttttaaaagatttaagttggtcccttacgctttaaaagtttcaagttg-gtccaaatgttactcacattggaataa 13490454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 214 - 359
Target Start/End: Complemental strand, 38262889 - 38262744
Alignment:
Q  214 tgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaa 313  Q
    ||||| |||||||| || || ||| |||||||||||| |||||||||||  |   ||| ||||||| ||||||||||||| ||||  |||  |||||| |    
T  38262889 tgtttcaaaagtttcaaattagtctcttatattttaaaagttttaagtttgtctcaaacgttactcccattagaataagttagtcctttctatcacttga 38262790  T
Q  314 ccgtttaaagattcgggttgacaatatggatgatggaattcaactt 359  Q
    |||||||   ||  |||||||  ||||||||| ||||||| |||||    
T  38262789 ccgtttagctatatgggttgagtatatggatgttggaatttaactt 38262744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 207 - 303
Target Start/End: Complemental strand, 14473894 - 14473798
Alignment:
Q  207 tcccttctgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttc 303  Q
    |||||| |||||||||||||||||||||||  ||| | |||| | ||||| |||||| | ||||| ||||||||  || |||||||| |||| ||||    
T  14473894 tcccttatgttttaaaagttttaagttggtgtcttttgttttgagagtttcaagttggtccaaaacgttactcattttggaataagttagtcccttc 14473798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 298
Target Start/End: Original strand, 1352880 - 1352971
Alignment:
Q  207 tcccttctgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtc 298  Q
    |||||| | ||||| || ||||||||||||| |||| ||||||| |||||||||||| |  ||||||||| |||| ||  ||||||| ||||    
T  1352880 tcccttgtattttacaaattttaagttggtctcttacattttaaaagttttaagttggtctaaaatgttattcacgttgaaataagttagtc 1352971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 293
Target Start/End: Complemental strand, 3221191 - 3221105
Alignment:
Q  207 tcccttctgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagt 293  Q
    |||||| |||||||||||||| |||||||||| |||| |||||| | ||| |||||| |  |||| ||||||||  || ||||||||    
T  3221191 tcccttatgttttaaaagtttcaagttggtccattatgttttaaaattttcaagttggtctaaaacgttactcatgttggaataagt 3221105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 448
Target Start/End: Original strand, 15988519 - 15988565
Alignment:
Q  402 aagggattaacttatttcaatgtgggtaatattttggaccaacttaa 448  Q
    |||||| ||||||||| ||||||| ||||| ||||||||||||||||    
T  15988519 aagggactaacttattccaatgtgagtaatgttttggaccaacttaa 15988565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 417
Target Start/End: Complemental strand, 13140469 - 13140421
Alignment:
Q  369 ttttattttattatacttaatatcatgtcgcataagggattaacttatt 417  Q
    ||||||||||||||||| |||||||||||||  || ||| |||||||||    
T  13140469 ttttattttattatactcaatatcatgtcgcggaatggactaacttatt 13140421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 303
Target Start/End: Original strand, 24015859 - 24015955
Alignment:
Q  207 tcccttctgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttc 303  Q
    |||||| ||||||||||||||||||||||||| |||  |||| | | ||| | |||| | |||||  ||||| |||||  ||||||| |||||||||    
T  24015859 tcccttatgttttaaaagttttaagttggtcctttacgttttgaaaatttcatgttggtccaaaacattactgacattgaaataagttagtctcttc 24015955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 242
Target Start/End: Original strand, 39060363 - 39060391
Alignment:
Q  214 tgttttaaaagttttaagttggtccctta 242  Q
    |||||||||||||||||||||||||||||    
T  39060363 tgttttaaaagttttaagttggtccctta 39060391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 6e-32; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 214 - 364
Target Start/End: Original strand, 6376421 - 6376571
Alignment:
Q  214 tgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaa 313  Q
    |||||||||||||||||||||||||||||  |||||| ||||| |||||||||||||| ||| |||||||| |||||||| ||||||||  |||||||      
T  6376421 tgttttaaaagttttaagttggtcccttaggttttaaaagtttcaagttgattcaaaacgtttctcacatttgaataagttagtctcttttgtcacttgt 6376520  T
Q  314 ccgtttaaagattcgggttgacaatatggatgatggaattcaacttgttta 364  Q
    |||||||||||||  ||||| |||| ||| ||||| |||| ||||| ||||    
T  6376521 ccgtttaaagattttggttggcaatgtgggtgatgaaatttaacttattta 6376571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 216 - 364
Target Start/End: Complemental strand, 34536039 - 34535892
Alignment:
Q  216 ttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaacc 315  Q
    |||||||||||||||||||||| ||||  |||||  ||||| ||||||||  |||| ||||||||| || |||||||| |||| |||||||||||||| |    
T  34536039 ttttaaaagttttaagttggtctcttacgttttagaagtttcaagttgatcaaaaacgttactcacgttggaataagttagtcccttcggtcacttaa-c 34535941  T
Q  316 gtttaaagattcgggttgacaatatggatgatggaattcaacttgttta 364  Q
    |||| |||||||||||||||||||||||| |||||| | ||||| ||||    
T  34535940 gtttgaagattcgggttgacaatatggattatggaacttaacttattta 34535892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 207 - 347
Target Start/End: Complemental strand, 48462157 - 48462018
Alignment:
Q  207 tcccttctgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggt 306  Q
    |||||| |||||||||||||| |||||||||  |||| |||||| |||||||||||||| ||||| ||||| | | || |||||||| ||||||||| ||    
T  48462157 tcccttatgttttaaaagtttcaagttggtcatttatgttttaaaagttttaagttgatccaaaacgttacccgccttggaataagttagtctcttccgt 48462058  T
Q  307 cacttaaccgtttaaagattcgggttgacaatatggatgat 347  Q
    ||||||| |||||||||||| || |||||||||||| ||||    
T  48462057 cacttaa-cgtttaaagatttggattgacaatatgggtgat 48462018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 214 - 301
Target Start/End: Complemental strand, 36469892 - 36469805
Alignment:
Q  214 tgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctct 301  Q
    |||||||||||||||||||||||||||||  |||||| ||||| |||||| | ||||||||||||||| || |||||||| |||||||    
T  36469892 tgttttaaaagttttaagttggtcccttacgttttaaaagtttcaagttggtccaaaatgttactcacgttggaataagttagtctct 36469805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 212 - 303
Target Start/End: Original strand, 34535744 - 34535835
Alignment:
Q  212 tctgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttc 303  Q
    |||||||||||||||| ||| ||||||||||  |||||| |||||||||||| | ||||| |||||||| ||| |||||||| |||| ||||    
T  34535744 tctgttttaaaagtttcaagctggtcccttacgttttaaaagttttaagttggtccaaaacgttactcatattggaataagttagtcccttc 34535835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 214 - 291
Target Start/End: Original strand, 48461847 - 48461924
Alignment:
Q  214 tgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataa 291  Q
    |||||||||||||||||||||||| ||||  |||||| ||| | |||||||| ||||| ||||||||| |||||||||    
T  48461847 tgttttaaaagttttaagttggtctcttacgttttaaaagtatgaagttgatccaaaacgttactcacgttagaataa 48461924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 207 - 342
Target Start/End: Original strand, 22566351 - 22566483
Alignment:
Q  207 tcccttctgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggt 306  Q
    |||||| |||||||||||||| ||||||||||||||  |||||| |||||   |||| | ||||| ||||||||| ||  ||||| | |||| |||| ||    
T  22566351 tcccttatgttttaaaagtttcaagttggtcccttacgttttaaaagttt--cgttggtccaaaacgttactcacgttgaaataaattagtcccttccgt 22566448  T
Q  307 cacttaaccgtttaaagattcgggttgacaatatgg 342  Q
    || |||| |||||||||||| ||||||||| |||||    
T  22566449 catttaa-cgtttaaagatttgggttgacagtatgg 22566483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 207 - 298
Target Start/End: Original strand, 8560677 - 8560768
Alignment:
Q  207 tcccttctgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtc 298  Q
    |||||| | |||||||||||||||||||||||| || ||||||| ||||| | |||| | ||||| ||||||||||||  ||||||| ||||    
T  8560677 tcccttatattttaaaagttttaagttggtcccctacattttaaaagtttcatgttggtccaaaacgttactcacattgtaataagttagtc 8560768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 224 - 298
Target Start/End: Complemental strand, 24188246 - 24188172
Alignment:
Q  224 gttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtc 298  Q
    |||| ||||||||||||||| |||||| ||||| |||||| ||||||||||||||||| |  |||||||| ||||    
T  24188246 gtttcaagttggtcccttatgttttaagagtttcaagttggttcaaaatgttactcacgtcggaataagttagtc 24188172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 367 - 448
Target Start/End: Complemental strand, 34535869 - 34535788
Alignment:
Q  367 ttttttattttattatacttaatatcatgtcgcataagggattaacttatttcaatgtgggtaatattttggaccaacttaa 448  Q
    |||||| |||||||| ||| |||||||||||||  |||||| ||||||||| |||| || ||||  ||||||||||||||||    
T  34535869 ttttttgttttattaaactcaatatcatgtcgcggaagggactaacttattccaatatgagtaacgttttggaccaacttaa 34535788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 207 - 339
Target Start/End: Original strand, 7460619 - 7460750
Alignment:
Q  207 tcccttctgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggt 306  Q
    |||||| |||||||||| ||| ||||||||||||||  |||||| | ||| |||||| | |||||   ||| ||| ||  ||||||| ||||| ||| ||    
T  7460619 tcccttatgttttaaaaatttcaagttggtcccttacgttttaaaaatttcaagttggtccaaaacactacccacgttgaaataagttagtcttttccgt 7460718  T
Q  307 cacttaaccgtttaaagattcgggttgacaata 339  Q
    ||||||| |||||||||||| ||||||| ||||    
T  7460719 cacttaa-cgtttaaagatttgggttgataata 7460750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 263
Target Start/End: Complemental strand, 34536059 - 34536021
Alignment:
Q  225 ttttaagttggtcccttatattttaacagttttaagttg 263  Q
    |||||||||||||||||| ||||||| ||||||||||||    
T  34536059 ttttaagttggtcccttacattttaaaagttttaagttg 34536021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 327
Target Start/End: Original strand, 24185724 - 24185836
Alignment:
Q  214 tgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaa 313  Q
    ||||||||||||||||| |||||| ||||| ||||||  |||| |||||| | ||||   |||||||| ||  ||||||| |||| |||| || |||| |    
T  24185724 tgttttaaaagttttaa-ttggtcacttatgttttaaaggtttcaagttggtccaaatatttactcacgttgaaataagttagtcccttccgttacttga 24185822  T
Q  314 ccgtttaaagattc 327  Q
    || |||||||||||    
T  24185823 ccttttaaagattc 24185836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 325
Target Start/End: Original strand, 6528184 - 6528268
Alignment:
Q  241 tatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaaccgtttaaagat 325  Q
    |||||||||| |||||||| ||| ||||||||||||||  ||| ||||||| | ||||| ||  |||||||| || ||| |||||    
T  6528184 tatattttaaaagttttaaattggttcaaaatgttacttgcatcagaataaattagtctattttgtcacttagccattttaagat 6528268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 214 - 366
Target Start/End: Complemental strand, 63081 - 62931
Alignment:
Q  214 tgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaa 313  Q
    |||||||||||||| |||||||||||||| ||||||| ||||| | |||| | ||||| ||||||||| || |||||||| ||||||||| |||||||||    
T  63081 tgttttaaaagtttcaagttggtcccttacattttaaaagtttcaggttggtccaaaacgttactcactttggaataagttagtctcttccgtcacttaa 62982  T
Q  314 ccgtttaaagattcgggttgacaatatggatgatggaattcaacttgtttaaa 366  Q
       ||||||||| | |||||||||||||| |||||||| | ||||| ||||||    
T  62981 --atttaaagatccaggttgacaatatgggtgatggaacttaacttatttaaa 62931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 214 - 303
Target Start/End: Original strand, 62781 - 62870
Alignment:
Q  214 tgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttc 303  Q
    |||||||||||||| |||||  |||||||  |||||| |||||||||||| | ||||| ||||||||| || |||||||| |||||||||    
T  62781 tgttttaaaagtttcaagttaatcccttacgttttaaaagttttaagttggtccaaaacgttactcacgttggaataagttagtctcttc 62870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 224 - 364
Target Start/End: Complemental strand, 16643093 - 16642953
Alignment:
Q  224 gttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaaccgtttaaag 323  Q
    |||||| |||||||| ||||||||||| ||||| |||||| ||| |||||||||||| |||  ||||||| ||||||||| ||||||| |||||||||||    
T  16643093 gttttatgttggtcctttatattttaaaagtttcaagttgcttctaaatgttactcagattgaaataagttagtctcttccgtcacttgaccgtttaaag 16642994  T
Q  324 attcgggttgacaatatggatgatggaattcaacttgttta 364  Q
    ||| |||||||||| || | ||||| |||| ||||| ||||    
T  16642993 atttgggttgacaacatcggtgatgaaatttaacttattta 16642953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 214 - 284
Target Start/End: Complemental strand, 34065350 - 34065280
Alignment:
Q  214 tgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacatt 284  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||||| || |||| ||||||||||||    
T  34065350 tgttttaaaagttttaagttggtcccttatattttaaaagtttaaagttggttaaaaacgttactcacatt 34065280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 207 - 341
Target Start/End: Original strand, 33992383 - 33992516
Alignment:
Q  207 tcccttctgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggt 306  Q
    |||||| ||||||| ||||||||| |||||||||||  |||||| ||||| |||||| ||||||| |||| |||| ||  ||||||| ||||| |||       
T  33992383 tcccttatgttttataagttttaaattggtcccttacgttttaaaagtttcaagttggttcaaaacgttattcacgttgaaataagttagtctattccac 33992482  T
Q  307 cacttaaccgtttaaagattcgggttgacaatatg 341  Q
    ||||||| |||||||||||| || |||||||||||    
T  33992483 cacttaa-cgtttaaagatttggattgacaatatg 33992516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 209 - 303
Target Start/End: Complemental strand, 32291157 - 32291063
Alignment:
Q  209 ccttctgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttc 303  Q
    |||| |||||||||| ||| ||||| ||| ||||  ||||||  |||||||||||||| |||| ||||||||| ||| ||||||| |||||||||    
T  32291157 ccttatgttttaaaaatttaaagttagtctcttacgttttaaaggttttaagttgatttaaaaggttactcactttaaaataagttagtctcttc 32291063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 207 - 284
Target Start/End: Complemental strand, 25508169 - 25508092
Alignment:
Q  207 tcccttctgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacatt 284  Q
    |||||| |||||||||||||| ||||| |||| |||||||||   |||||||||||| | ||||| ||||||||||||    
T  25508169 tcccttatgttttaaaagtttcaagttcgtcctttatatttttttagttttaagttggtccaaaacgttactcacatt 25508092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 225 - 285
Target Start/End: Complemental strand, 19935776 - 19935716
Alignment:
Q  225 ttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacatta 285  Q
    |||||||||||| |||| | |||||| ||||||||||||||  ||||||||||||||||||    
T  19935776 ttttaagttggtaccttgtgttttaaaagttttaagttgatctaaaatgttactcacatta 19935716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 293
Target Start/End: Complemental strand, 33992693 - 33992614
Alignment:
Q  214 tgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagt 293  Q
    ||||||||||||||||| ||||| |||||  |||||| |||||||| ||| ||||||| ||||||||  || ||||||||    
T  33992693 tgttttaaaagttttaaattggttccttacgttttaaaagttttaaattggttcaaaacgttactcatgttggaataagt 33992614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 218 - 339
Target Start/End: Complemental strand, 25879908 - 25879789
Alignment:
Q  218 ttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaaccgt 317  Q
    |||||||||| |||||||||||||||||||||| ||||| |||||| |||||||||||||  | ||| |||||||| |||| |||| ||||||||  |||    
T  25879908 ttaaaagtttcaagttggtcccttatattttaaaagtttcaagttggttcaaaatgttacatatattggaataagttagtcccttctgtcactta--cgt 25879811  T
Q  318 ttaaagattcgggttgacaata 339  Q
     |||||||||||||||||||||    
T  25879810 ctaaagattcgggttgacaata 25879789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 207 - 364
Target Start/End: Complemental strand, 16049842 - 16049688
Alignment:
Q  207 tcccttctgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggt 306  Q
    |||||| ||||||||||||||||||||| ||  |||  |||||| ||||| |||||| | ||||||||||||||| || |||||| | ||||| ||  ||    
T  16049842 tcccttatgttttaaaagttttaagttgatc--ttacgttttaaaagtttcaagttggtccaaaatgttactcacgttggaataaattagtctatttagt 16049745  T
Q  307 cacttaaccgtttaaagattcgggttgacaatatggatgatggaattcaacttgttta 364  Q
    |||||||  |||| ||||||||||||||||||||||||||||||| | ||||| ||||    
T  16049744 cacttaat-gttttaagattcgggttgacaatatggatgatggaacttaacttattta 16049688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 214 - 366
Target Start/End: Complemental strand, 34439581 - 34439431
Alignment:
Q  214 tgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaa 313  Q
    |||||||||||||| ||||||||||||||  |||||| ||||| |||||| | ||||| ||||||||| || || ||||| ||||||||| |||||||||    
T  34439581 tgttttaaaagtttcaagttggtcccttacgttttaaaagtttaaagttggtccaaaacgttactcacgttggattaagttagtctcttccgtcacttaa 34439482  T
Q  314 ccgtttaaagattcgggttgacaatatggatgatggaattcaacttgtttaaa 366  Q
       ||||||||| | | |||||||||||| |||||||| | ||||| ||||||    
T  34439481 --atttaaagatccagtttgacaatatgggtgatggaacttaacttatttaaa 34439431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 361 - 446
Target Start/End: Complemental strand, 16049664 - 16049579
Alignment:
Q  361 tttaaattttttattttattatacttaatatcatgtcgcataagggattaacttatttcaatgtgggtaatattttggaccaactt 446  Q
    ||||| |||||| |||||||| ||| ||||||||||||||||||||| ||||||||| ||||||||||||  ||||||||||||||    
T  16049664 tttaatttttttgttttattaaactcaatatcatgtcgcataagggactaacttattccaatgtgggtaacgttttggaccaactt 16049579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 217 - 353
Target Start/End: Complemental strand, 32665902 - 32665767
Alignment:
Q  217 tttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaaccg 316  Q
    |||||||||||||| |||| ||||||| |||||| |||||||||||| | |||||  ||||||  ||| |||||||| ||| |||||  | |||| ||||    
T  32665902 tttaaaagttttaaattggacccttatgttttaagagttttaagttggtccaaaactttactcg-attggaataagttagtatcttcctttacttgaccg 32665804  T
Q  317 tttaaagattcgggttgacaatatggatgatggaatt 353  Q
    |||||| |||||| |||||||||||||||||| ||||    
T  32665803 tttaaatattcggattgacaatatggatgatgaaatt 32665767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 216 - 353
Target Start/End: Original strand, 9081230 - 9081365
Alignment:
Q  216 ttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaacc 315  Q
    ||||||||||||||| |||  ||||||| |||||| |||||||||||| |||||||  ||||||  ||| |||||||| ||| |||||  |||||| |||    
T  9081230 ttttaaaagttttaaattga-cccttatgttttaagagttttaagttggttcaaaactttactcg-attggaataagttagtatcttccttcacttgacc 9081327  T
Q  316 gtttaaagattcgggttgacaatatggatgatggaatt 353  Q
    ||||||| || ||| |||||||||||||||||| ||||    
T  9081328 gtttaaatatccggattgacaatatggatgatgaaatt 9081365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 216 - 337
Target Start/End: Complemental strand, 7645139 - 7645019
Alignment:
Q  216 ttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaacc 315  Q
    |||||||||||| |||||| ||||||| ||||||| ||||| |||||||| ||||| ||||||||| ||  ||||||| ||   || | ||||||||| |    
T  7645139 ttttaaaagtttcaagttgatcccttacattttaaaagtttcaagttgatccaaaacgttactcacgttgcaataagttaggacctccagtcacttaa-c 7645041  T
Q  316 gtttaaagattcgggttgacaa 337  Q
    |||||||||||||| |||||||    
T  7645040 gtttaaagattcggattgacaa 7645019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 207 - 303
Target Start/End: Original strand, 4623117 - 4623213
Alignment:
Q  207 tcccttctgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttc 303  Q
    |||||| |||||||||||||||||||||||| ||||  ||||||  |||| |||||| | ||||||||||||||||||  ||||||| |||| ||||    
T  4623117 tcccttatgttttaaaagttttaagttggtctcttacgttttaaaggtttcaagttggtccaaaatgttactcacattgaaataagttagtcccttc 4623213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 207 - 283
Target Start/End: Original strand, 9710264 - 9710340
Alignment:
Q  207 tcccttctgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacat 283  Q
    |||||| |||||||||||||| |||||||||||||| ||||||| ||||| |||||| | ||||| |||||||||||    
T  9710264 tcccttatgttttaaaagtttcaagttggtcccttacattttaaaagtttcaagttggtccaaaacgttactcacat 9710340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 214 - 298
Target Start/End: Original strand, 34687809 - 34687893
Alignment:
Q  214 tgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtc 298  Q
    |||||||||| ||| ||||||||||||||| |||||| ||||| |||||| | ||||| ||||||||| ||||||||||| ||||    
T  34687809 tgttttaaaaatttcaagttggtcccttatgttttaaaagtttcaagttggtccaaaacgttactcactttagaataagttagtc 34687893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 229 - 303
Target Start/End: Original strand, 18429483 - 18429557
Alignment:
Q  229 aagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttc 303  Q
    |||||||||||||||||||||| ||||| |||||| | |||||| |||||||| ||||||||||| |||| ||||    
T  18429483 aagttggtcccttatattttaaaagtttcaagttggtccaaaatattactcacgttagaataagttagtcccttc 18429557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 207 - 281
Target Start/End: Original strand, 18935101 - 18935175
Alignment:
Q  207 tcccttctgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcac 281  Q
    |||||| |||||||||| ||||||||||||||||||| || ||| ||||| || ||| |||||||||||||||||    
T  18935101 tcccttttgttttaaaacttttaagttggtcccttatgttataaaagtttcaaattggttcaaaatgttactcac 18935175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 374 - 446
Target Start/End: Complemental strand, 4623240 - 4623168
Alignment:
Q  374 ttttattatacttaatatcatgtcgcataagggattaacttatttcaatgtgggtaatattttggaccaactt 446  Q
    |||||||| ||| | |||||||||||  |||||| ||||||||||||||||| |||| |||||||||||||||    
T  4623240 ttttattaaactcagtatcatgtcgcggaagggactaacttatttcaatgtgagtaacattttggaccaactt 4623168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 253 - 341
Target Start/End: Original strand, 7535356 - 7535444
Alignment:
Q  253 gttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaaccgtttaaagattcgggttgacaatatg 341  Q
    ||||||||||| ||||||| |||||||||||| |||||||| ||| ||||   |||||| | |||||||||||||  ||||||||||||    
T  7535356 gttttaagttggttcaaaacgttactcacattggaataagttagtttcttttatcacttgatcgtttaaagattcaagttgacaatatg 7535444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 368 - 448
Target Start/End: Complemental strand, 18548715 - 18548635
Alignment:
Q  368 tttttattttattatacttaatatcatgtcgcataagggattaacttatttcaatgtgggtaatattttggaccaacttaa 448  Q
    ||||| |||||||| ||| |||||||||||||  |||||| |||||||||||||  || ||||| ||||||||||||||||    
T  18548715 tttttgttttattaaactcaatatcatgtcgcgaaagggactaacttatttcaacttgagtaatgttttggaccaacttaa 18548635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 214 - 281
Target Start/End: Complemental strand, 18429681 - 18429614
Alignment:
Q  214 tgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcac 281  Q
    |||||||||||||| ||||||||||||||  |||||| |||||||||||| | ||||| |||||||||    
T  18429681 tgttttaaaagtttaaagttggtcccttacgttttaaaagttttaagttggtccaaaacgttactcac 18429614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 215 - 293
Target Start/End: Original strand, 21446041 - 21446117
Alignment:
Q  215 gttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagt 293  Q
    ||||||||||||||  ||||||| ||||  ||||||  |||| |||||| |||||||||||||||||||||||||||||    
T  21446041 gttttaaaagtttt--gttggtctcttacgttttaaaggtttcaagttgtttcaaaatgttactcacattagaataagt 21446117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 209 - 298
Target Start/End: Original strand, 16049530 - 16049619
Alignment:
Q  209 ccttctgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtc 298  Q
    |||| ||||||||||||||||||||||||||||   |||||| | ||| |||||| | ||||| ||||| |||||| |||||||| ||||    
T  16049530 ccttatgttttaaaagttttaagttggtccctttcgttttaaaaatttcaagttggtccaaaacgttacccacattggaataagttagtc 16049619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 448
Target Start/End: Complemental strand, 7644955 - 7644876
Alignment:
Q  369 ttttattttattatacttaatatcatgtcgcataagggattaacttatttcaatgtgggtaatattttggaccaacttaa 448  Q
    ||||||||||||| ||| |||||||||| ||  |||||| ||||||||| |||| || ||||| ||| ||||||||||||    
T  7644955 ttttattttattaaactcaatatcatgttgcggaagggactaacttattccaatctgagtaatgtttcggaccaacttaa 7644876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 298
Target Start/End: Complemental strand, 7535617 - 7535527
Alignment:
Q  208 cccttctgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtc 298  Q
    ||||| ||||||||||| || |||||||||||||| ||||||   ||||||||||| | ||||| ||||||||| ||  ||||||| ||||    
T  7535617 cccttatgttttaaaagattcaagttggtcccttacattttacaggttttaagttggtccaaaacgttactcacgttgaaataagttagtc 7535527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 364
Target Start/End: Complemental strand, 18548889 - 18548744
Alignment:
Q  216 ttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaacc 315  Q
    ||||||||||||| |||| ||| ||||  |||| | ||||  || ||| |||| || ||| |||| ||| |||||||| |||||||||  |||||||| |    
T  18548889 ttttaaaagttttgagtttgtctcttacgttttcaaagttgcaaattggttcacaacgttgctcaaattggaataagttagtctcttccatcacttaaac 18548790  T
Q  316 gtttaaagattcgggttgacaatatggatgatggaattcaacttgttta 364  Q
    |||||||||||||   ||||||| | | |||||||||| ||||| ||||    
T  18548789 gtttaaagattcg---tgacaatctaggtgatggaatttaacttattta 18548744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 214 - 303
Target Start/End: Original strand, 25879622 - 25879711
Alignment:
Q  214 tgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttc 303  Q
    ||||||||||||||||| |||||| ||||  |||||| ||||| |||||  ||||||| ||||| ||| || |||||||| |||| ||||    
T  25879622 tgttttaaaagttttaaattggtcacttacgttttaatagtttcaagttagttcaaaacgttacccacgttggaataagttagtcccttc 25879711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 368 - 448
Target Start/End: Original strand, 7535489 - 7535569
Alignment:
Q  368 tttttattttattatacttaatatcatgtcgcataagggattaacttatttcaatgtgggtaatattttggaccaacttaa 448  Q
    ||||| ||| |||| ||| |||||||||||||   ||||| ||||||||||||| ||| ||||  ||||||||||||||||    
T  7535489 tttttgtttcattaaactcaatatcatgtcgcggtagggactaacttatttcaacgtgagtaacgttttggaccaacttaa 7535569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 207 - 303
Target Start/End: Original strand, 7644827 - 7644923
Alignment:
Q  207 tcccttctgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttc 303  Q
    |||||| |||||||||||||| |||||| |||||||  |||||| | |||||||||| | | |||  ||||||| ||| |||||||| |||| ||||    
T  7644827 tcccttatgttttaaaagtttcaagttgatcccttacgttttaaaaattttaagttggtccgaaacattactcagattggaataagttagtcccttc 7644923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 321
Target Start/End: Original strand, 23871161 - 23871260
Alignment:
Q  222 aagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaaccgtttaa 321  Q
    |||||| |||||||||||| |||||||||  |||| |||||| | ||||||||||||| | ||  ||||||| |||| ||||  |||||| || ||||||    
T  23871161 aagtttcaagttggtccctcatattttaaaggtttcaagttggtccaaaatgttactcgcgttgaaataagttagtcacttccatcactttactgtttaa 23871260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 348
Target Start/End: Complemental strand, 4623429 - 4623297
Alignment:
Q  214 tgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaa 313  Q
    |||||||||||||| ||||||||| ||||| |||||| ||||| ||||||  ||||||   |  |||| ||  ||||||| |||| |||| |||||||||    
T  4623429 tgttttaaaagtttcaagttggtcacttatgttttaaaagtttcaagttg-gtcaaaaacattttcacgttgaaataagttagtcccttcagtcacttaa 4623331  T
Q  314 ccgtttaaagattcgggttgacaatatggatgatg 348  Q
     |||||||||||| || || ||||| ||| |||||    
T  4623330 -cgtttaaagatttggatttacaatgtgggtgatg 4623297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 293
Target Start/End: Complemental strand, 18935413 - 18935327
Alignment:
Q  207 tcccttctgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagt 293  Q
    |||||| |||||||||||||| ||||||||| ||| | |||||| ||||| |||||| | | ||| ||||||  |||| ||||||||    
T  18935413 tcccttatgttttaaaagtttcaagttggtctcttgtgttttaaaagtttcaagttggtcccaaacgttactttcattggaataagt 18935327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 265
Target Start/End: Original strand, 7644816 - 7644856
Alignment:
Q  225 ttttaagttggtcccttatattttaacagttttaagttgat 265  Q
    ||||||||||||||||||| |||||| ||||| ||||||||    
T  7644816 ttttaagttggtcccttatgttttaaaagtttcaagttgat 7644856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 265
Target Start/End: Complemental strand, 16049849 - 16049813
Alignment:
Q  229 aagttggtcccttatattttaacagttttaagttgat 265  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  16049849 aagttggtcccttatgttttaaaagttttaagttgat 16049813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 446
Target Start/End: Complemental strand, 18429584 - 18429512
Alignment:
Q  374 ttttattatacttaatatcatgtcgcataagggattaacttatttcaatgtgggtaatattttggaccaactt 446  Q
    |||||||| ||| ||||| ||||||   |||||| |||||||||  || ||| ||||||||||||||||||||    
T  18429584 ttttattaaactcaatattatgtcgtggaagggactaacttattctaacgtgagtaatattttggaccaactt 18429512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 303
Target Start/End: Original strand, 34439278 - 34439366
Alignment:
Q  215 gttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttc 303  Q
    |||||||||| || ||||||||||||||  |||||| || || |||||| | ||||| |||| |||| ||  ||||||| |||||||||    
T  34439278 gttttaaaagattcaagttggtcccttacgttttaaaagattcaagttggtccaaaacgttattcacgttgcaataagttagtctcttc 34439366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 214 - 364
Target Start/End: Complemental strand, 32629408 - 32629259
Alignment:
Q  214 tgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaa 313  Q
    ||||||||||||||| ||||||||||||||||||||| | ||| |||||  ||||||| ||||| ||||||  ||||||| ||||||||| |||| ||||    
T  32629408 tgttttaaaagttttgagttggtcccttatattttaaaaatttcaagttcgttcaaaacgttacccacattgtaataagttagtctcttccgtcatttaa 32629309  T
Q  314 ccgtttaaagattcgggttgacaatatggatgatggaattcaacttgttta 364  Q
    |||||||||||||  |||| ||||||||  ||||| |||| ||||| ||||    
T  32629308 ccgtttaaagatt-tggttaacaatatgagtgatgtaatttaacttattta 32629259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 207 - 366
Target Start/End: Original strand, 6611659 - 6611817
Alignment:
Q  207 tcccttctgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggt 306  Q
    |||||| |||||||||||||| |||||||||||| || |||||| ||||| |||||| ||||||| ||| |||  ||| |||||||| |||| |||| ||    
T  6611659 tcccttatgttttaaaagtttcaagttggtccctcatgttttaaaagtttcaagttggttcaaaacgttgctctaattggaataagttagtcccttctgt 6611758  T
Q  307 cacttaaccgtttaaagattcgggttgacaatatggatgatggaattcaacttgtttaaa 366  Q
     |||||||| |||||||||||  ||||||||||||| | |||||||| || || ||||||    
T  6611759 tacttaaccatttaaagattc-agttgacaatatgggttatggaatttaatttatttaaa 6611817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 214 - 340
Target Start/End: Complemental strand, 13498435 - 13498310
Alignment:
Q  214 tgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaa 313  Q
    |||||||||||||||| ||||||| ||||| | |||| ||||| |||| |||||||||| ||||||||||| |||||||| ||||  ||  ||||||| |    
T  13498435 tgttttaaaagttttatgttggtctcttatgtattaaaagtttcaagtagattcaaaatattactcacatt-gaataagttagtcatttatgtcacttga 13498337  T
Q  314 ccgtttaaagattcgggttgacaatat 340  Q
    |||||||||||||||| ||||||||||    
T  13498336 ccgtttaaagattcggattgacaatat 13498310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 246 - 359
Target Start/End: Complemental strand, 17343210 - 17343097
Alignment:
Q  246 tttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaaccgtttaaagattcgggttgacaatatggatg 345  Q
    ||||| ||||| |||||| | ||||||||||||||| ||||||||||| |||||||||  |||||| |||||||| |||||| |||| | ||||||  ||    
T  17343210 tttaaaagtttcaagttggtccaaaatgttactcaccttagaataagttagtctcttccatcacttgaccgtttagagattcaggttaagaatatgagtg 17343111  T
Q  346 atggaattcaactt 359  Q
    |||||||| |||||    
T  17343110 atggaatttaactt 17343097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 215 - 303
Target Start/End: Original strand, 10567519 - 10567607
Alignment:
Q  215 gttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttc 303  Q
    ||||||||||||| ||||||||||||||  |||||| ||||| |||||| ||||||| ||||||||||||  ||||||| |||||||||    
T  10567519 gttttaaaagtttcaagttggtcccttacgttttaaaagtttcaagttggttcaaaacgttactcacattgaaataagttagtctcttc 10567607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 214 - 366
Target Start/End: Complemental strand, 10567819 - 10567669
Alignment:
Q  214 tgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaa 313  Q
    |||||||| ||||| ||||||||||||||  |||||| ||||| |||||| | |||||  |||||||| || |||||||| ||||||||| |||||||||    
T  10567819 tgttttaagagtttcaagttggtcccttacgttttaaaagtttcaagttggtccaaaacattactcacgttggaataagttagtctcttccgtcacttaa 10567720  T
Q  314 ccgtttaaagattcgggttgacaatatggatgatggaattcaacttgtttaaa 366  Q
       |||||||||   |||||| ||||| | |||||||| | ||||| ||||||    
T  10567719 --atttaaagatctaggttgataatataggtgatggaacttaacttatttaaa 10567669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 222 - 364
Target Start/End: Original strand, 34829615 - 34829756
Alignment:
Q  222 aagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaaccgtttaa 321  Q
    |||||||||||||||  ||||| |||||| ||||| |||||  ||||| |  ||||||||||| |||||||| |||| | || ||||| | |  ||||||    
T  34829615 aagttttaagttggttacttatgttttaaaagtttcaagttagttcaatacattactcacattggaataagttagtcac-tccgtcacctgattgtttaa 34829713  T
Q  322 agattcgggttgacaatatggatgatggaattcaacttgttta 364  Q
    || |||||||||||||||||| ||||| |||| ||||| ||||    
T  34829714 agtttcgggttgacaatatgggtgatgaaatttaacttattta 34829756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 224 - 364
Target Start/End: Complemental strand, 29675218 - 29675077
Alignment:
Q  224 gttttaagttggtcccttatattttaacag-ttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaaccgtttaaa 322  Q
    |||||||||||||| || || |||||| || |||||||||| |||| || |||| ||||||| |||||||| |||  |||| ||||||| ||||||||||    
T  29675218 gttttaagttggtctctcatgttttaaaagattttaagttggttcagaacgttattcacattggaataagttagttccttccgtcacttgaccgtttaaa 29675119  T
Q  323 gattcgggttgacaatatggatgatggaattcaacttgttta 364  Q
    | |||   |||||||||||| |||| | ||| ||||| ||||    
T  29675118 gtttcaaattgacaatatgggtgattggatttaacttattta 29675077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 207 - 293
Target Start/End: Original strand, 22793349 - 22793435
Alignment:
Q  207 tcccttctgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagt 293  Q
    |||||| |||||||||||||| ||||||||||||||| |||||| |||||||| || || || || |||| |||| || ||||||||    
T  22793349 tcccttatgttttaaaagtttcaagttggtcccttatgttttaaaagttttaatttcatccacaacgttagtcaccttggaataagt 22793435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 225 - 303
Target Start/End: Original strand, 28613232 - 28613310
Alignment:
Q  225 ttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttc 303  Q
    ||||||||||||||||||  |||||| |||| ||||||| | ||||| |||||||| ||| |||||||| |||||||||    
T  28613232 ttttaagttggtcccttacgttttaaaagttgtaagttggtccaaaacgttactcatattggaataagttagtctcttc 28613310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 361 - 446
Target Start/End: Complemental strand, 10567647 - 10567562
Alignment:
Q  361 tttaaattttttattttattatacttaatatcatgtcgcataagggattaacttatttcaatgtgggtaatattttggaccaactt 446  Q
    ||||| |||||| |||||||| ||| |||||||||||| | ||| || ||||||||||||||||| ||||  ||||| ||||||||    
T  10567647 tttaatttttttgttttattaaactcaatatcatgtcgtagaagagactaacttatttcaatgtgagtaacgttttgaaccaactt 10567562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 214 - 341
Target Start/End: Complemental strand, 28613524 - 28613400
Alignment:
Q  214 tgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaa 313  Q
    |||||||||| ||| ||||||||||||||  |||||| ||||| |||||| |  |||| |||  || |||| |||||||| ||||| ||| |||||||||    
T  28613524 tgttttaaaaatttcaagttggtcccttacgttttaaaagtttcaagttggtcaaaaacgtt-ttctcattggaataagttagtcttttccgtcacttaa 28613426  T
Q  314 ccgtttaaagattcgggttgacaatatg 341  Q
       ||||||||| | |||||||||||||    
T  28613425 --atttaaagatccaggttgacaatatg 28613400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 29674933 - 29674989
Alignment:
Q  215 gttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaa 271  Q
    ||||||||||||| ||||||||||||||  |||||| ||||| |||||||| |||||    
T  29674933 gttttaaaagtttcaagttggtcccttaagttttaaaagtttcaagttgatccaaaa 29674989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 341
Target Start/End: Original strand, 11121946 - 11122080
Alignment:
Q  207 tcccttctgttttaaaagttttaagttggtccctta-tattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcgg 305  Q
    |||||| | |||||||||||| |||||||||| ||| | | || | ||||| |||||| || |||| |||||||||||| || ||| | ||||| |||      
T  11121946 tcccttatattttaaaagtttcaagttggtcctttaatgtctttaaagtttcaagttggtttaaaa-gttactcacattggattaatttagtcttttcca 11122044  T
Q  306 tcacttaaccgtttaaagattcgggttgacaatatg 341  Q
    |||||| ||||||||||  | |||||||||||||||    
T  11122045 tcacttgaccgtttaaatgtccgggttgacaatatg 11122080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 281
Target Start/End: Original strand, 32629118 - 32629185
Alignment:
Q  214 tgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcac 281  Q
    |||||||||| |||||||||||||||||| |||||||  |||| |||||  | ||||| |||||||||    
T  32629118 tgttttaaaaattttaagttggtcccttacattttaaaggtttcaagttagtccaaaacgttactcac 32629185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 298
Target Start/End: Original strand, 6273653 - 6273727
Alignment:
Q  224 gttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtc 298  Q
    |||| |||||||| | |||| ||||||  ||||||||||| | ||||| ||||||||||||| ||||||| ||||    
T  6273653 gtttcaagttggttctttatgttttaaacgttttaagttggtccaaaacgttactcacattaaaataagttagtc 6273727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 293
Target Start/End: Complemental strand, 22793644 - 22793575
Alignment:
Q  224 gttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagt 293  Q
    |||| ||||||||||||||  |||||| ||||| |||||  | |||||||||||||| ||| ||||||||    
T  22793644 gtttcaagttggtcccttacgttttaaaagtttcaagtttgtccaaaatgttactcatattggaataagt 22793575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 263
Target Start/End: Complemental strand, 6612002 - 6611946
Alignment:
Q  207 tcccttctgttttaaaagttttaagttggtcccttatattttaacagttttaagttg 263  Q
    |||||| |||||||||||||| ||||||||||||||  ||||||  |||| ||||||    
T  6612002 tcccttgtgttttaaaagtttcaagttggtcccttacgttttaaatgtttcaagttg 6611946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 278
Target Start/End: Original strand, 18972525 - 18972589
Alignment:
Q  214 tgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttact 278  Q
    ||||||||||||||||||||  || ||||||||||||  ||||| | ||||| ||||| ||||||    
T  18972525 tgttttaaaagttttaagttactctcttatattttaaaggttttgaattgatccaaaacgttact 18972589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 298
Target Start/End: Complemental strand, 34829913 - 34829829
Alignment:
Q  214 tgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtc 298  Q
    |||||||||||||| | ||||||||||||  ||||||  |||| |||||| ||||||| ||||| || |||  ||||||| ||||    
T  34829913 tgttttaaaagtttcatgttggtcccttacgttttaaaggtttcaagttggttcaaaacgttacccatattgaaataagttagtc 34829829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0548 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 207 - 347
Target Start/End: Complemental strand, 3396 - 3257
Alignment:
Q  207 tcccttctgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggt 306  Q
    |||||| |||||||||||||| ||||||||||||||  |||||| ||||| |||||| | ||||| ||||||||| || |||||||| |||| |||| ||    
T  3396 tcccttatgttttaaaagtttcaagttggtcccttacgttttaaaagtttcaagttggtccaaaacgttactcactttggaataagttagtcccttctgt 3297  T
Q  307 cacttaaccgtttaaagattcgggttgacaatatggatgat 347  Q
    |||||||  ||||| ||||| ||||||||||||||| ||||    
T  3296 cacttaa-tgtttatagatttgggttgacaatatgggtgat 3257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 214 - 334
Target Start/End: Complemental strand, 9930 - 9811
Alignment:
Q  214 tgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaa 313  Q
    |||||||||||||| ||| || |  ||||  |||||| |||||||| ||| | ||||||||||||| ||||  ||||||  |||||||||  | ||||||    
T  9930 tgttttaaaagtttcaagatgattgcttacgttttaaaagttttaatttggtacaaaatgttactcgcattgaaataagctagtctcttctataacttaa 9831  T
Q  314 ccgtttaaagattcgggttga 334  Q
     ||||||||||||| ||||||    
T  9830 -cgtttaaagattcaggttga 9811  T

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Target: scaffold0365 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 214 - 334
Target Start/End: Complemental strand, 10573 - 10454
Alignment:
Q  214 tgttttaaaagttttaagttggtcccttatattttaacagttttaagttgattcaaaatgttactcacattagaataagtcagtctcttcggtcacttaa 313  Q
    |||||||||||||| ||| || |  ||||  |||||| |||||||| ||| | ||||||||||||| ||||  ||||||  |||||||||  | ||||||    
T  10573 tgttttaaaagtttcaagatgattgcttacgttttaaaagttttaatttggtacaaaatgttactcgcattgaaataagctagtctcttctataacttaa 10474  T
Q  314 ccgtttaaagattcgggttga 334  Q
     ||||||||||||| ||||||    
T  10473 -cgtttaaagattcaggttga 10454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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