View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14773_low_5 (Length: 414)
Name: NF14773_low_5
Description: NF14773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14773_low_5 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 12 - 414
Target Start/End: Complemental strand, 35790407 - 35790028
Alignment:
| Q |
12 |
cataggctataaataaagagatagtacaagtgatttgaagtaatatttggtggaaggcaagagagaaagaaaactcagaacactgtctttgtttgtgttc |
111 |
Q |
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| T |
35790407 |
cataggctataaataaagagata---caagtggtttgaagtaatatttggtggaaggcaagagagaaagaaacctcagaacactgtctttgtttgtgttc |
35790311 |
T |
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| Q |
112 |
caaaccaacatcatcgtcataatggcttaccgattatcatcatcgtataacgaaaaacaacgttagtttctttccttttgcttttattcattcttcagtt |
211 |
Q |
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| T |
35790310 |
caaaccaacatcatcgtcataatggcttaccgattatcatcatcgtataacgaaaaacaacgttagtttctttccttttgcttttattcattcttcagtt |
35790211 |
T |
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| Q |
212 |
tttgcatggatttactctttgatgtcaaactgtatttattttctcttttccttttaatttgtatcgacgcataatagaaaaaagaggggtgagttgaaat |
311 |
Q |
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| T |
35790210 |
tttgcatgga-ttactctttgatgtcaaactgtttttattttctcttttccttttaatttgtatcgatgcata------------------agttgaaat |
35790130 |
T |
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| Q |
312 |
cttatcgtgacacattataaacaaaaccctatctcattaaattggttaattgttatatgcaacttatcatacatgaaactgttttgattatggtgttata |
411 |
Q |
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| T |
35790129 |
cttatcgtgacacattttaaacaaaaccctatctcattaaattggtt-agtgttatatgcaacttatcatacatgaaactgttttgattatggtgttata |
35790031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 202 - 260
Target Start/End: Complemental strand, 35800394 - 35800337
Alignment:
| Q |
202 |
ttcttcagtttttgcatggatttactctttgatgtcaaactgtatttattttctctttt |
260 |
Q |
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| T |
35800394 |
ttcttcagtttttgcatggattga-tctttgatgtgaaactgtttttattttctctttt |
35800337 |
T |
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