View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14773_low_6 (Length: 413)

Name: NF14773_low_6
Description: NF14773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14773_low_6
NF14773_low_6
[»] chr6 (17 HSPs)
chr6 (10-395)||(2929672-2930059)
chr6 (10-391)||(2996703-2997084)
chr6 (11-392)||(2934965-2935349)
chr6 (24-391)||(2937827-2938194)
chr6 (49-391)||(2927527-2927869)
chr6 (25-391)||(2974374-2974740)
chr6 (66-391)||(3003174-3003495)
chr6 (19-391)||(2983233-2983605)
chr6 (10-391)||(2964876-2965280)
chr6 (66-310)||(2952384-2952624)
chr6 (24-391)||(2658311-2658696)
chr6 (10-114)||(2954726-2954829)
chr6 (124-389)||(2979257-2979521)
chr6 (315-391)||(2985695-2985771)
chr6 (174-233)||(2954666-2954725)
chr6 (18-69)||(2986421-2986472)
chr6 (25-57)||(2952657-2952689)
[»] scaffold0024 (2 HSPs)
scaffold0024 (11-391)||(34573-34953)
scaffold0024 (281-391)||(44532-44642)
[»] chr7 (1 HSPs)
chr7 (11-391)||(3339392-3339775)
[»] chr3 (3 HSPs)
chr3 (66-391)||(49613803-49614128)
chr3 (67-391)||(49618779-49619102)
chr3 (77-191)||(49617650-49617758)


Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 10 - 395
Target Start/End: Complemental strand, 2930059 - 2929672
Alignment:
Q  10 gataatactaatagcaataattatgaactaaacaatgaaagaaatca--cttggaggcttgtactacttgcaagactgaacaaactgattgaagtaaagt 107  Q
    |||||||  |||| ||||||||||||||| |||||| ||||||||||  || |||||||||||| ||||||||||| |||||||||||||||||||||||    
T  2930059 gataataagaataacaataattatgaactcaacaataaaagaaatcaagctaggaggcttgtacaacttgcaagacagaacaaactgattgaagtaaagt 2929960  T
Q  108 gagaacaagtagtaaaattcccgcaacggaagcagcagtgtgccaaggagtattgcaataatcacgcctgagagtagccttcaacctatgccaaggattc 207  Q
    ||||| ||||||||| | ||| |||| |||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  2929959 gagaaaaagtagtaagaatccagcaatggaagcagcagtttgccaaggagtacttcaataatcacgcctgagagtagccttcaacctatgccaaggattc 2929860  T
Q  208 ttacaaaaagcatttaagtctttgcatagaatagagaattgagaactgatattagaatgtataatatttttgcaaagaccattaaacatgttagccacag 307  Q
    | |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  2929859 taacaaaaagcatttaagtctttgcatagaatagagaaatgaggactgatattagaatgtataatatatttgcaaaaaccattaaacatgttagccacag 2929760  T
Q  308 aatgattgtctccaaaccaattttccagtatttctttctgaataagtatgtccgcgtccttaccagtatttataaggaaatccataat 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||    
T  2929759 aatgattgtctccaaaccaattttccagtatttctttctgaataagtatatcggcgtccttaccagtatttataagaaaatccataat 2929672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 10 - 391
Target Start/End: Original strand, 2996703 - 2997084
Alignment:
Q  10 gataatactaatagcaataattatgaactaaacaatgaaagaaatcacttggaggcttgtactacttgcaagactgaacaaactgattgaagtaaagtga 109  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||  |||||||    
T  2996703 gataatactaatagcaataattatgaactcaacaatgaaagaaatcactaggaggcttgtacaacttgcaagacagaacaaactgattgaataaaagtga 2996802  T
Q  110 gaacaagtagtaaaattcccgcaacggaagcagcagtgtgccaaggagtattgcaataatcacgcctgagagtagccttcaacctatgccaaggattctt 209  Q
    |||||||||||| |||||| |||| |||||||||||  ||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||| |    
T  2996803 gaacaagtagtacaattccagcaaaggaagcagcagcttgccaaggagtcttgccataatcacgcctgagagtagccttcaacttatgccaaggattcct 2996902  T
Q  210 acaaaaagcatttaagtctttgcatagaatagagaattgagaactgatattagaatgtataatatttttgcaaagaccattaaacatgttagccacagaa 309  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||| | ||||| || |||| |||||||||||||||||| |||||||||||||    
T  2996903 acaaaaagcatttaagtccttgcaaagaatagagaattgagaactgatattggtatgtacaacatttatgcaaagaccattaaacaagttagccacagaa 2997002  T
Q  310 tgattgtctccaaaccaattttccagtatttctttctgaataagtatgtccgcgtccttaccagtatttataaggaaatcca 391  Q
    | | ||||||||| ||||||||||||||||||||| |||| |||||| ||  | ||||||||||| ||||||||| ||||||    
T  2997003 tcactgtctccaagccaattttccagtatttctttgtgaacaagtatatcaacatccttaccagtgtttataaggtaatcca 2997084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 392
Target Start/End: Complemental strand, 2935349 - 2934965
Alignment:
Q  11 ataatactaatagcaataattatgaactaaacaatgaaagaaatcacttggaggcttgt---actacttgcaagactgaacaaactgattgaagtaaagt 107  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||   || ||||||||||| |||||||||||||||||||||||    
T  2935349 ataatactaatagaaataattatgaactcaacaatgaaagaaatcactaggaggcttgttgtacaacttgcaagacagaacaaactgattgaagtaaagt 2935250  T
Q  108 gagaacaagtagtaaaattcccgcaacggaagcagcagtgtgccaaggagtattgcaataatcacgcctgagagtagccttcaacctatgccaaggattc 207  Q
    ||||| ||||||||| ||||| |||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2935249 gagaaaaagtagtaagattccagcaatggaagcagcagtttgccaaggagttttgcaataatcacgcctgagagtagccttcaacttatgccaaggattc 2935150  T
Q  208 ttacaaaaagcatttaagtctttgcatagaatagagaattgagaactgatattagaatgtataatatttttgcaaagaccattaaacatgttagccacag 307  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||| |||||| |||||||||||||||| |||||||||||    
T  2935149 ttacaaaaagcatttaagtctttgcatagaatagagaaatgagaactgatattagattgtgtaacatttttccaaagaccattaaacaagttagccacag 2935050  T
Q  308 aatgattgtctccaaaccaattttccagtatttctttctgaataagtatgtccgcgtccttaccagtatttataaggaaatccat 392  Q
    ||| | | ||  ||| |  ||| | ||||||||| ||| ||| |||||| || || ||| ||||||||||||||||| |||||||    
T  2935049 aatcactatccgcaagcatattatgcagtatttcgttccgaacaagtatatcagcatccgtaccagtatttataaggtaatccat 2934965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 24 - 391
Target Start/End: Complemental strand, 2938194 - 2937827
Alignment:
Q  24 caataattatgaactaaacaatgaaagaaatcacttggaggcttgtactacttgcaagactgaacaaactgattgaagtaaagtgagaacaagtagtaaa 123  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||     
T  2938194 caataattatgaactcaacaatgaaagaaatcactaggaggcttgtacaacttgcaagacagaacaaactgattgaagtaaagtgagaataagtagtaag 2938095  T
Q  124 attcccgcaacggaagcagcagtgtgccaaggagtattgcaataatcacgcctgagagtagccttcaacctatgccaaggattcttacaaaaagcattta 223  Q
    ||||| |||| |||||||||||| ||||||||||| |||| |||||||||||| ||||||||||||||| |||||||||||||  | || ||||||||||    
T  2938094 attccagcaatggaagcagcagtttgccaaggagttttgccataatcacgcctcagagtagccttcaacttatgccaaggattactgcagaaagcattta 2937995  T
Q  224 agtctttgcatagaatagagaattgagaactgatattagaatgtataatatttttgcaaagaccattaaacatgttagccacagaatgattgtctccaaa 323  Q
    | |||||||| ||||||||||||||||||||||||| ||||| || || |||||||||||||||||||||||  ||||||||||||| | |||||||||     
T  2937994 attctttgcaaagaatagagaattgagaactgatatcagaatatacaacatttttgcaaagaccattaaacaaattagccacagaatcactgtctccaag 2937895  T
Q  324 ccaattttccagtatttctttctgaataagtatgtccgcgtccttaccagtatttataaggaaatcca 391  Q
    |||||||||||||||||  |||  || ||||||  |||| |||||||| |||||||||||| ||||||    
T  2937894 ccaattttccagtattttgttccaaacaagtatacccgcatccttaccggtatttataaggtaatcca 2937827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 49 - 391
Target Start/End: Complemental strand, 2927869 - 2927527
Alignment:
Q  49 agaaatcacttggaggcttgtactacttgcaagactgaacaaactgattgaagtaaagtgagaacaagtagtaaaattcccgcaacggaagcagcagtgt 148  Q
    |||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |    
T  2927869 agaaatcactaggaggcttgtacaacttgcaagacagaacaaactgattgaagtaaagtgagaacaagtagtaagattcccgcaatggaagcagcagttt 2927770  T
Q  149 gccaaggagtattgcaataatcacgcctgagagtagccttcaacctatgccaaggattcttacaaaaagcatttaagtctttgcatagaatagagaattg 248  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||| |  |||||||||||| ||||||||||||||||||| ||||||||||||||    
T  2927769 gccaaggagttttgcaataatcacgcctgagagtagccttcaacttatgtcgtggattcttacaataagcatttaagtctttgcaaagaatagagaattg 2927670  T
Q  249 agaactgatattagaatgtataatatttttgcaaagaccattaaacatgttagccacagaatgattgtctccaaaccaattttccagtatttctttctga 348  Q
    |||||||||  ||||| || ||| |||||| | |||||||||||||| |||||||||||||| |  |||||||| |  |||||||||||||||  |||||    
T  2927669 agaactgattgtagaacgtgtaacatttttaccaagaccattaaacaagttagccacagaatcaccgtctccaagcatattttccagtatttccctctga 2927570  T
Q  349 ataagtatgtccgcgtccttaccagtatttataaggaaatcca 391  Q
    | |||||| ||| | ||||||||||||||||||||| ||||||    
T  2927569 acaagtatatccacatccttaccagtatttataaggtaatcca 2927527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 25 - 391
Target Start/End: Complemental strand, 2974740 - 2974374
Alignment:
Q  25 aataattatgaactaaacaatgaaagaaatcacttggaggcttgtactacttgcaagactgaacaaactgattgaagtaaagtgagaacaagtagtaaaa 124  Q
    |||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||| |||||||||  ||||| || ||||||||||||||| ||||    
T  2974740 aataattatgaactcaacaatgaaagaaatcactaggatgcttgtactacttgcaagacagaacaaactctttgaattatagtgagaacaagtagaaaaa 2974641  T
Q  125 ttcccgcaacggaagcagcagtgtgccaaggagtattgcaataatcacgcctgagagtagccttcaacctatgccaaggattcttacaaaaagcatttaa 224  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||| ||||||| ||    
T  2974640 ttccagcaatggaagcagcagtgtgccaaggagtattgcaataatcacgccttagagcagccttcaacctatgccaaggattcctacaataagcattcaa 2974541  T
Q  225 gtctttgcatagaatagagaattgagaactgatattagaatgtataatatttttgcaaagaccattaaacatgttagccacagaatgattgtctccaaac 324  Q
     |||||||| ||||||||||| ||||||||||||||||||| | |||||||||  | |||||||||||| | | |||| ||||||| | ||||||||| |    
T  2974540 ttctttgcaaagaatagagaaatgagaactgatattagaatttgtaatattttctccaagaccattaaataagatagcaacagaatcactgtctccaagc 2974441  T
Q  325 caattttccagtatttctttctgaataagtatgtccgcgtccttaccagtatttataaggaaatcca 391  Q
    ||||||| |||||| |   || ||| |||||| ||| | ||| ||| ||||||||||||| ||||||    
T  2974440 caattttgcagtatattgctccgaacaagtatatccacatccgtactagtatttataaggtaatcca 2974374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 66 - 391
Target Start/End: Original strand, 3003174 - 3003495
Alignment:
Q  66 ttgtactacttgcaagactgaacaaactgattgaagtaaagtgagaacaagtagtaaaattcccgcaacggaagcagcagtgtgccaaggagtattgcaa 165  Q
    |||||||||||||||||    |||||||| |||||||||||||||| |||| ||||| ||||| |||| |||||||||||| ||||| ||||| ||||||    
T  3003174 ttgtactacttgcaaga----acaaactgtttgaagtaaagtgagagcaaggagtaagattccagcaatggaagcagcagtttgccagggagttttgcaa 3003269  T
Q  166 taatcacgcctgagagtagccttcaacctatgccaaggattcttacaaaaagcatttaagtctttgcatagaatagagaattgagaactgatattagaat 265  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||  |||||||||||||||||||||||  |||||     
T  3003270 taatcacgcctgagagtagccttcaacttatgccatggattcttacaataagcatttaagtctttgccaagaatagagaattgagaactgattgtagaac 3003369  T
Q  266 gtataatatttttgcaaagaccattaaacatgttagccacagaatgattgtctccaaaccaattttccagtatttctttctgaataagtatgtccgcgtc 365  Q
    ||||||||| ||||| |||||||||||||| |||||||||||||| | ||||||||| |  |||||||||||||||  |||||| |||||| ||| | ||    
T  3003370 gtataatatctttgccaagaccattaaacaagttagccacagaatcactgtctccaagcatattttccagtatttcgctctgaacaagtatatccacatc 3003469  T
Q  366 cttaccagtatttataaggaaatcca 391  Q
    |||| |||||||||||||| ||||||    
T  3003470 cttagcagtatttataaggtaatcca 3003495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 19 - 391
Target Start/End: Complemental strand, 2983605 - 2983233
Alignment:
Q  19 aatagcaataattatgaactaaacaatgaaagaaatcacttggaggcttgtactacttgcaagactgaacaaactgattgaagtaaagtgagaacaagta 118  Q
    |||| ||||||||||||||| ||||||||||||||| ||| ||| |||||||||| ||||||||| |||||||||| ||||| || ||||||||||||||    
T  2983605 aataacaataattatgaactcaacaatgaaagaaatgactaggatgcttgtactatttgcaagacagaacaaactgtttgaattatagtgagaacaagta 2983506  T
Q  119 gtaaaattcccgcaacggaagcagcagtgtgccaaggagtattgcaataatcacgcctgagagtagccttcaacctatgccaaggattcttacaaaaagc 218  Q
    |||| | ||| ||||||||||||||| | | |||||||||||||| |||||||||||||||||| ||||||||| ||| || |||||| |||||||||||    
T  2983505 gtaagactccagcaacggaagcagcaattttccaaggagtattgccataatcacgcctgagagtggccttcaacttattcctaggattattacaaaaagc 2983406  T
Q  219 atttaagtctttgcatagaatagagaattgagaactgatattagaatgtataatatttttgcaaagaccattaaacatgttagccacagaatgattgtct 318  Q
    ||  || || ||| | ||| |   ||| ||| ||||||  ||||| | || || ||||||||||||||||||||||| | |||||| ||| |||  ||||    
T  2983405 atccaattcattggaaagacttacgaaatgataactgagtttagattttacaacatttttgcaaagaccattaaacaagatagccatagattgaccgtct 2983306  T
Q  319 ccaaaccaattttccagtatttctttctgaataagtatgtccgcgtccttaccagtatttataaggaaatcca 391  Q
    |||| | | ||||| |||||||  |||||||||||||  ||| | ||||||||| ||||||||||| ||||||    
T  2983305 ccaagcaagttttctagtatttgcttctgaataagtacatccacatccttaccattatttataaggtaatcca 2983233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 10 - 391
Target Start/End: Complemental strand, 2965280 - 2964876
Alignment:
Q  10 gataatactaatagcaataattatgaactaaacaatgaaagaaatcacttggaggc---------ttgtactacttgcaagactgaacaaactgattgaa 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||         |||||||||||||||||    |||||||| |||||    
T  2965280 gataatactaatagcaataattatgaactcaacaatgaaagaaatcactaggaagcattaggttgttgtactacttgcaaga----acaaactgtttgaa 2965185  T
Q  101 gtaaagtgagaacaagtagtaaaattcccgcaacggaagcagcagtgtgccaaggagtattgcaataatcacgcctgagagtagccttcaacct------ 194  Q
     ||||||||||||||||||||| ||||| |||| |||||||||||  |||||||||||| |||| ||||||||| | ||||| | ||||||| |          
T  2965184 ttaaagtgagaacaagtagtaagattccagcaaaggaagcagcagcttgccaaggagtactgcagtaatcacgcatcagagtggacttcaacttcaacgt 2965085  T
Q  195 ----at--------gccaaggattcttacaaaaagcatttaagtctttgcatagaatagagaattgagaactgatattagaatgtataatatttttgcaa 282  Q
        ||        |||||||||||  |||||||||||| || |||||||| |||||||||||||||  |||||||||||||||||||| || |||| ||    
T  2965084 caacattaactggcgccaaggattcccacaaaaagcattcaaatctttgcaaagaatagagaattgaagactgatattagaatgtataacatatttggaa 2964985  T
Q  283 agaccattaaacatgttagccacagaatgattgtctccaaaccaattttccagtatttctttctgaataagtatgtccgcgtccttaccagtatttataa 382  Q
    ||||||||||||| |||||||||||||| | | ||||||| |  ||||||||||||||  ||||||| |||||| ||| | ||||| |||||||||||||    
T  2964984 agaccattaaacaagttagccacagaatcactatctccaagcatattttccagtattttgttctgaacaagtatatccacatccttgccagtatttataa 2964885  T
Q  383 ggaaatcca 391  Q
    || ||||||    
T  2964884 ggtaatcca 2964876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 66 - 310
Target Start/End: Complemental strand, 2952624 - 2952384
Alignment:
Q  66 ttgtactacttgcaagactgaacaaactgattgaagtaaagtgagaacaagtagtaaaattcccgcaacggaagcagcagtgtgccaaggagtattgcaa 165  Q
    |||||||||||||||||    |||||||| |||||||||||||||| |||| ||||  ||||| |||| |||||||||||| ||||||||||| |||| |    
T  2952624 ttgtactacttgcaaga----acaaactgtttgaagtaaagtgagagcaaggagtacgattccagcaatggaagcagcagtttgccaaggagttttgcca 2952529  T
Q  166 taatcacgcctgagagtagccttcaacctatgccaaggattcttacaaaaagcatttaagtctttgcatagaatagagaattgagaactgatattagaat 265  Q
    ||||||||||| ||||| || |||||| ||| |||||||||  ||||||| |||||||  |||||||  | |||||||||||||||||||||||||||||    
T  2952528 taatcacgcctcagagtggctttcaacttattccaaggattactacaaaatgcatttatttctttgccaataatagagaattgagaactgatattagaat 2952429  T
Q  266 gtataatatttttgcaaagaccattaaacatgttagccacagaat 310  Q
     || || ||||||||||| |||||||||| |||||||||||||||    
T  2952428 atacaacatttttgcaaataccattaaacctgttagccacagaat 2952384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 24 - 391
Target Start/End: Original strand, 2658311 - 2658696
Alignment:
Q  24 caataattatgaactaaacaatgaaagaaatcacttggaggc------ttgtactacttgcaagactgaacaaactgattgaagtaaagtgagaacaagt 117  Q
    ||||||||||||||  ||||||||||||||||||| |||| |      |||||||||||| ||||| |||||||||| ||||| || |||||||| ||||    
T  2658311 caataattatgaaccgaacaatgaaagaaatcactaggagccattaggttgtactacttgaaagacagaacaaactgtttgaattatagtgagaataagt 2658410  T
Q  118 agtaaaattcccgcaacggaagcagcagtgtgccaaggagtattgcaataatcacgcctgagagtagc------------cttcaacctatgccaaggat 205  Q
    ||||| ||||| |||| ||||||| |||  | |||||||||| |||||||||||||||| |||||  |            ||| ||| || |||||||||    
T  2658411 agtaagattccagcaaaggaagcaccagctttccaaggagtactgcaataatcacgcctcagagtgccaatcaatgagtacttaaacttaggccaaggat 2658510  T
Q  206 tcttacaaaaagcatttaagtctttgcatagaatagagaattgagaactgatattagaatgtataatatttttgcaaagaccattaaacatgttagccac 305  Q
    || |||||||| | ||||||||||  || ||||||| ||| |||| |||| ||||| ||||  ||| |||||||||||||||| |||||| |||||||||    
T  2658511 tcctacaaaaatcttttaagtcttcacaaagaatagtgaaatgaggactgctattacaatgagtaacatttttgcaaagaccagtaaacaagttagccac 2658610  T
Q  306 agaatgattgtctccaaaccaattttccagtatttctttctgaataagtatgtccgcgtccttaccagtatttataaggaaatcca 391  Q
    ||||| | ||||||||| |||||||||||||||||  ||  ||| |||||| ||| | ||||||||||||||||||||| ||||||    
T  2658611 agaatcactgtctccaagccaattttccagtattttgtttggaacaagtatatccacatccttaccagtatttataaggtaatcca 2658696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 10 - 114
Target Start/End: Complemental strand, 2954829 - 2954726
Alignment:
Q  10 gataatactaatagcaataattatgaactaaacaatgaaagaaatcacttggaggcttgtactacttgcaagactgaacaaactgattgaagtaaagtga 109  Q
    ||||||||||||||||||||| ||||||| |||| |||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  2954829 gataatactaatagcaataat-atgaactcaacattgaaagaaatcactaggaggcttgtactacttgcaagacagaacaaattgattgaagtaaagtga 2954731  T
Q  110 gaaca 114  Q
     ||||    
T  2954730 taaca 2954726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 124 - 389
Target Start/End: Complemental strand, 2979521 - 2979257
Alignment:
Q  124 attcccgcaacggaagcagcagtgtgccaagga--gtattgcaataatcacgcctgagagtagccttcaacct------atgccaaggattcttacaaaa 215  Q
    ||||| ||||||||||||||| | |||| ||||  |||||||||  |||| ||||||||| |||||||||  |      ||||||||||||  || ||||    
T  2979521 attccagcaacggaagcagcaatttgcctaggatcgtattgcaacgatcatgcctgagagaagccttcaagttcaactcatgccaaggattactataaaa 2979422  T
Q  216 agcatttaagtctttgcatagaatagagaattgagaactgatattagaatgtataatatttttgcaaagaccattaaacatgttagccacagaatgattg 315  Q
    | ||||||| |||||||| ||||||||||| |||||||||||||         ||| ||||| ||||||| |||||||||  |||||  |||||||| ||    
T  2979421 atcatttaaatctttgcaaagaatagagaaatgagaactgatat---------taacattttcgcaaagatcattaaacaatttagcagcagaatgactg 2979331  T
Q  316 tctccaaaccaattttccagtatttctttctgaataagtatgtccgcgtccttaccagtatttataaggaaatc 389  Q
    ||||||| | |||||||||||||||   || ||| |||||| ||| | ||| |||| |||||||||||| ||||    
T  2979330 tctccaagcaaattttccagtattttgctccgaacaagtatatccacatccgtaccggtatttataaggtaatc 2979257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 315 - 391
Target Start/End: Complemental strand, 2985771 - 2985695
Alignment:
Q  315 gtctccaaaccaattttccagtatttctttctgaataagtatgtccgcgtccttaccagtatttataaggaaatcca 391  Q
    ||||| ||||||||||||||||||||  ||||||| |||||| ||||| ||||||| ||||||||||||| ||||||    
T  2985771 gtctcgaaaccaattttccagtatttggttctgaacaagtatatccgcatccttactagtatttataaggtaatcca 2985695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 2954725 - 2954666
Alignment:
Q  174 cctgagagtagccttcaacctatgccaaggattcttacaaaaagcatttaagtctttgca 233  Q
    ||||||||||||||||||| || ||||||||||| |||||||||||||||| ||||||||    
T  2954725 cctgagagtagccttcaacttacgccaaggattcctacaaaaagcatttaattctttgca 2954666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 2986472 - 2986421
Alignment:
Q  18 taatagcaataattatgaactaaacaatgaaagaaatcacttggaggcttgt 69  Q
    ||||| ||||||||||||||| ||||||||||||||||||| ||||||||||    
T  2986472 taataacaataattatgaactcaacaatgaaagaaatcactaggaggcttgt 2986421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 2952689 - 2952657
Alignment:
Q  25 aataattatgaactaaacaatgaaagaaatcac 57  Q
    |||||||||||||| ||||||||||||||||||    
T  2952689 aataattatgaactcaacaatgaaagaaatcac 2952657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 11 - 391
Target Start/End: Original strand, 34573 - 34953
Alignment:
Q  11 ataatactaatagcaataattatgaactaaacaatgaaagaaatcacttggaggcttgtactacttgcaagactgaacaaactgattgaagtaaagtgag 110  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  34573 ataatactaatagcaataattatgaactcaacaatgaaagaaatcactaggaggcttgtactacttgcaagacagaacaaactgattgaagcaaagtgag 34672  T
Q  111 aacaagtagtaaaattcccgcaacggaagcagcagtgtgccaaggagtattgcaataatcacgcctgagagtagccttcaacctatgccaaggattctta 210  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||| |||| ||||||||||||||||| |||||||||||||| |||||||||  ||    
T  34673 aacaagtagtaaaattccagcaacggaagcagcagtttgccaaggagttttgccataatcacgcctgagagaagccttcaacctattccaaggattacta 34772  T
Q  211 caaaaagcatttaagtctttgcatagaatagagaattgagaactgatattagaatgtataatatttttgcaaagaccattaaacatgttagccacagaat 310  Q
    ||||| |||||||||| |||||| ||||||||||| |||||||||||||||  |||||||| |||||||||||||| |||||||| ||||||||||||||    
T  34773 caaaatgcatttaagtttttgcaaagaatagagaaatgagaactgatattatgatgtataacatttttgcaaagacgattaaacaagttagccacagaat 34872  T
Q  311 gattgtctccaaaccaattttccagtatttctttctgaataagtatgtccgcgtccttaccagtatttataaggaaatcca 391  Q
     | ||||||||| | ||||   ||||||||||||| ||| |||||| ||||| ||||||||||||||||||||||||||||    
T  34873 cactgtctccaagcaaattagtcagtatttctttccgaacaagtatatccgcatccttaccagtatttataaggaaatcca 34953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 281 - 391
Target Start/End: Original strand, 44532 - 44642
Alignment:
Q  281 aaagaccattaaacatgttagccacagaatgattgtctccaaaccaattttccagtatttctttctgaataagtatgtccgcgtccttaccagtatttat 380  Q
    ||||| |||||||||  ||||||||| ||||| ||||||||| | |||||||||||||||   || ||| | |||| || || |||||||||||||||||    
T  44532 aaagatcattaaacaaattagccacataatgactgtctccaagcaaattttccagtattttgctccgaacatgtatatctgcatccttaccagtatttat 44631  T
Q  381 aaggaaatcca 391  Q
    |||| ||||||    
T  44632 aaggtaatcca 44642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 11 - 391
Target Start/End: Complemental strand, 3339775 - 3339392
Alignment:
Q  11 ataatactaatagcaataattatga---actaaacaatgaaagaaatcacttggaggcttgtactacttgcaagactgaacaaactgattgaagtaaagt 107  Q
    |||||||||| ||||||||||||||   ||| ||||| ||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||    
T  3339775 ataatactaagagcaataattatgatgaactcaacaaagaaagaaatcactaggaggcctgtactacttgcaagacagaacaaactgattgaagtaaagt 3339676  T
Q  108 gagaacaagtagtaaaattcccgcaacggaagcagcagtgtgccaaggagtattgcaataatcacgcctgagagtagccttcaacctatgccaaggattc 207  Q
    |||||||||||||| |||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3339675 gagaacaagtagtacaattccagcaatggaagcagcagtttgccaaggagtattgcaataatcacgcctgagagtggccttcaacctatgccaaggattc 3339576  T
Q  208 ttacaaaaagcatttaagtctttgcatagaatagagaattgagaactgatattagaatgtataatatttttgcaaagaccattaaacatgttagccacag 307  Q
    ||||||||| |||||||||||||||  ||| ||| ||| |||||||| | | ||||||| |||| |||||||||||||||||||||||  ||||||||||    
T  3339575 ttacaaaaatcatttaagtctttgccaagagtagggaaatgagaacttacactagaatgcataacatttttgcaaagaccattaaacaatttagccacag 3339476  T
Q  308 aatgattgtctccaaaccaattttccagtatttctttctgaataagtatgtccgcgtccttaccagtatttataaggaaatcca 391  Q
    ||| | ||||| ||| ||||||||| ||||||||  ||| || |||||| ||| | ||| ||| ||||||||||||||||||||    
T  3339475 aatcactgtctgcaagccaattttctagtatttcgctcttaacaagtatatccacatccatactagtatttataaggaaatcca 3339392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 66 - 391
Target Start/End: Complemental strand, 49614128 - 49613803
Alignment:
Q  66 ttgtactacttgcaagactgaacaaactgattgaagtaaagtgagaacaagtagtaaaattcccgcaacggaagcagcagtgtgccaaggagtattgcaa 165  Q
    |||||| |||||||| |||| |||||||||||||||||||| ||||| ||||||||||||||| |||| |||||||||||| ||||||||| | ||||||    
T  49614128 ttgtacaacttgcaacactgcacaaactgattgaagtaaagagagaataagtagtaaaattccagcaatggaagcagcagtttgccaaggactgttgcaa 49614029  T
Q  166 taatcacgcctgagagtagccttcaacctatgccaaggattcttacaaaaagcatttaagtctttgcatagaatagagaattgagaactgatattagaat 265  Q
    |||||||| |||||||| |||||||| |||||||||||||  | ||||||| |||| |||||||  |||||||||||| | |||||||||| ||   |||    
T  49614028 taatcacgtctgagagtcgccttcaatctatgccaaggatcatgacaaaaaccattcaagtcttcacatagaatagagtactgagaactgaaatacaaat 49613929  T
Q  266 gtataatatttttgcaaagaccattaaacatgttagccacagaatgattgtctccaaaccaattttccagtatttctttctgaataagtatgtccgcgtc 365  Q
    || ||| |||||| ||||||| |||||||| |||||||||||||| | | || |||| ||||||  |||||||||  ||||||| |||||| ||| | ||    
T  49613928 gtgtaacatttttccaaagactattaaacaagttagccacagaatcactatccccaagccaattcaccagtattttcttctgaacaagtatatccacatc 49613829  T
Q  366 cttaccagtatttataaggaaatcca 391  Q
    ||| |||||||| |||||||||||||    
T  49613828 cttgccagtattaataaggaaatcca 49613803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 67 - 391
Target Start/End: Complemental strand, 49619102 - 49618779
Alignment:
Q  67 tgtactacttgcaagactgaacaaactgattgaagtaaagtgagaacaagtagtaaaattcccgcaacggaagcagcagtgtgccaaggagtattgcaat 166  Q
    ||||| ||||||||||  |||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||| |||||||||||| ||| ||    
T  49619102 tgtacaacttgcaagatagaacaaactgattgaagtaaagagagaacaagtagtaaaattccagcaatggaagcagcagtttgccaaggagtactgccat 49619003  T
Q  167 aatcacgcctgagagtagccttcaacctatgccaaggattcttacaaaaagcatttaagtctttgcatagaatagagaattgagaactgatattagaatg 266  Q
    ||||||||||||||||||||||||   ||||||||||||| ||||||||| || | ||||||||    |||| | |||| |||||||||| |||   |||    
T  49619002 aatcacgcctgagagtagccttcagtttatgccaaggattattacaaaaacca-tcaagtctttaggaagaagacagaaatgagaactgaaatttatatg 49618904  T
Q  267 tataatatttttgcaaagaccattaaacatgttagccacagaatgattgtctccaaaccaattttccagtatttctttctgaataagtatgtccgcgtcc 366  Q
    |  || |||||| |||||||||||| ||| ||| |||||||||| | ||||| ||| |  ||| ||| ||||| || |||||| |||||| ||||| |||    
T  49618903 tgaaacatttttccaaagaccattatacaagtttgccacagaatcactgtctgcaagcatattatcctgtattcctctctgaacaagtatatccgcatcc 49618804  T
Q  367 ttaccagtatttataaggaaatcca 391  Q
     ||||  ||||||||||| ||||||    
T  49618803 ctaccgatatttataaggtaatcca 49618779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 77 - 191
Target Start/End: Complemental strand, 49617758 - 49617650
Alignment:
Q  77 gcaagactgaacaaactgattgaagtaaagtgagaacaagtagtaaaattcccgcaacggaagcagcagtgtgccaaggagtattgcaataatcacgcct 176  Q
    ||||||| ||| ||||||||||||||||||  |||| ||||||||||||||| ||||| |||||||| || |||||   | || ||||| ||||| ||||    
T  49617758 gcaagacagaataaactgattgaagtaaag--agaataagtagtaaaattccagcaacagaagcagctgt-tgcca---actagtgcaaaaatcatgcct 49617665  T
Q  177 gagagtagccttcaa 191  Q
    |||||||||||||||    
T  49617664 gagagtagccttcaa 49617650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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