View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14773_low_7 (Length: 410)
Name: NF14773_low_7
Description: NF14773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14773_low_7 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 126; Significance: 7e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 152 - 410
Target Start/End: Complemental strand, 36677378 - 36677142
Alignment:
| Q |
152 |
tacatgtcccaaaatggttgttgnnnnnnntcagagaagttagattgtttataagttttatgaagaattagtatgagggacatattgttgcaacatttgg |
251 |
Q |
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| T |
36677378 |
tacatgtcccaaaatggttgttgaaaaaaatcagagaagatagattgtttataagttttatgaagaattagtatgagggacatattgttgcaacatttgg |
36677279 |
T |
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| Q |
252 |
tagagtttctaatgatcaaatgcttttaattgcattaatagtcattgttgaaagtgtgacaaaggacttacaatacaaacataatgtaatttaaaggtct |
351 |
Q |
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| T |
36677278 |
taa-------------------cttttaattgca---atagtcgttgttgaaagtgtgacaaaggacttacaatacaaatataatgtaatttaaaggtcc |
36677201 |
T |
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| Q |
352 |
atattgaggaaaaataacttaaaagatcaatcgaggaaatgaatcaaactcaaaggacc |
410 |
Q |
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| T |
36677200 |
atatcgaaaaaaaataacttaaaagatcaatcgaggaaatgaatcaaacttaaaggacc |
36677142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 36677603 - 36677477
Alignment:
| Q |
1 |
ccctttatgctatattaagtttgcatcatttgcctttagtttatattaaattacgcatgcttgtcctttagttcgagctttttctcgaattattgtcata |
100 |
Q |
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| T |
36677603 |
ccctttatgctatattaagtttgcaccatttgcctttagtttatattaaattacgcatgcttgtcctttagttcgagctttttctcgaattattgtcata |
36677504 |
T |
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| Q |
101 |
aaatattaaaatctaatccaaactgtg |
127 |
Q |
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| T |
36677503 |
aaatattaaaatctaatccaaactgtg |
36677477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 225 - 348
Target Start/End: Complemental strand, 37631945 - 37631825
Alignment:
| Q |
225 |
tgagggacatattgttgcaacatttggtagagtttctaatgatcaaatgcttttaattgcattaatagtcattgttgaaagtgtgacaaaggacttacaa |
324 |
Q |
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| T |
37631945 |
tgagggacatattgttgcatcatttagtaaagtttataatgattatatgctttcaattgc---acaagttgttgtacaaagtgagacaaatgactaacaa |
37631849 |
T |
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| Q |
325 |
tacaaacataatgtaatttaaagg |
348 |
Q |
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| T |
37631848 |
tgcaaacataatctaaattaaagg |
37631825 |
T |
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