View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14774_high_2 (Length: 243)
Name: NF14774_high_2
Description: NF14774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14774_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 227
Target Start/End: Original strand, 3819069 - 3819280
Alignment:
| Q |
16 |
atattcatcatactgtaaggtgaaaatccaaagatgagaagtggcctatgaacagaccaactcacaccttctttcttccctgtttcttcaaacaaaacat |
115 |
Q |
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| T |
3819069 |
atattcatcatactgtaaggtgaaaatccaaagatgagaagtggcctatgaacagaccaactcacaccttctttcttacctgtttcttcaaacaaaacat |
3819168 |
T |
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| Q |
116 |
cttcaagtgtataatagaaattatgataatccaaacgcggcatatcctctgtgtatggtggttcatggtacttgatcttgccaaatgattcaaagggtcc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3819169 |
cttcaagtgtataatagaaattatgataatccaaacgcggcatatcctctgtgtatggtggttcatggtacttgatcttgccgaatgattcaaagggtcc |
3819268 |
T |
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| Q |
216 |
tacatagtgctt |
227 |
Q |
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|||||||||||| |
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| T |
3819269 |
tacatagtgctt |
3819280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 47338808 - 47338597
Alignment:
| Q |
16 |
atattcatcatactgtaaggtgaaaatccaaagatgagaagtggcctatgaacagaccaactcacaccttctttcttccctgtttcttcaaacaaaacat |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
47338808 |
atattcatcatactgtaaggtgaaaatccaaagatgagaagtggcctatgaacagaccaactcacgccttctttcttccctgtttcttcaaacaaaacat |
47338709 |
T |
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| Q |
116 |
cttcaagtgtataatagaaattatgataatccaaacgcggcatatcctctgtgtatggtggttcatggtacttgatcttgccaaatgattcaaagggtcc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
47338708 |
cttcaagtgtataatagaaattatgataatccaaacgcggcatatcctctgtgtatggtggttcatggtacttgatcttgccgaatgattcaaagggtcc |
47338609 |
T |
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| Q |
216 |
tacatagtgctt |
227 |
Q |
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|||||||||||| |
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| T |
47338608 |
tacatagtgctt |
47338597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 47349815 - 47349696
Alignment:
| Q |
18 |
attcatcatactgtaaggtgaaaatccaaagatgagaagtggcctatgaacagaccaactcacaccttctttcttccctgtttcttcaaacaaaacatct |
117 |
Q |
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|||||||| |||||||||||| ||||||||||||||||| || ||||||||||||||||||| ||| |||||||| |||||||||||||| | |||| |
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| T |
47349815 |
attcatcaaactgtaaggtgagaatccaaagatgagaaggggtctatgaacagaccaactcaaaccctctttctttttggtttcttcaaacaagatatct |
47349716 |
T |
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| Q |
118 |
tcaagtgtataatagaaatt |
137 |
Q |
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|| | || ||||||||||| |
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| T |
47349715 |
tcctgagtgtaatagaaatt |
47349696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 47347276 - 47347157
Alignment:
| Q |
18 |
attcatcatactgtaaggtgaaaatccaaagatgagaagtggcctatgaacagaccaactcacaccttctttcttccctgtttcttcaaacaaaacatct |
117 |
Q |
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|||||||| ||| ||||||||||||||||| || | | || ||||||||||||||||||| ||| |||||||| |||||||||||||||| |||| |
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| T |
47347276 |
attcatcaaactataaggtgaaaatccaaatataacttgaggtctatgaacagaccaactcaaaccctctttcttttgagtttcttcaaacaaaatatct |
47347177 |
T |
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| Q |
118 |
tcaagtgtataatagaaatt |
137 |
Q |
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|| | || ||||||||||| |
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| T |
47347176 |
tcctgagtgtaatagaaatt |
47347157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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