View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14775_low_1 (Length: 758)
Name: NF14775_low_1
Description: NF14775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14775_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 518; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 15 - 544
Target Start/End: Original strand, 41697538 - 41698067
Alignment:
| Q |
15 |
gaaatgaagttgcgcccaatcccaccagctacaatttcatcttcagctggtggtactgaatttagagtgaatgcctaatgatcataaagaaaattttgtt |
114 |
Q |
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| T |
41697538 |
gaaatgaagttgcgcccaatcccaccagctacaatttcatcttcagctggtggtactgaatttagagtgaatgcctaatgatcataaagcaaattttgtt |
41697637 |
T |
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| Q |
115 |
cttaatacttactttaatattaagagatcatttgaaataatagggaatttttaccaatccattgctattaaatgcaaatgcagagcttggaagctcccca |
214 |
Q |
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| T |
41697638 |
cttaatacttactttaatattaagagatcatttgaaataatagggaatttttaccaatccattgctattaaatgcaaatgcagagcttggaagctcccca |
41697737 |
T |
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| Q |
215 |
gcatatgtataagcaacaaagaatagcccatttggcaatcttcctttaattaagtagctgcataacataaagaccaaaaaaggaaagaatacttataaag |
314 |
Q |
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| T |
41697738 |
gcatatgtataagcaacaaagaatagcccatttggcaatattcctttaattaagtagctgcataacataaagaccaaaaaaggaaagaatacttataaag |
41697837 |
T |
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| Q |
315 |
caattttatttgaattcgagaacaaaatatgaatatgaatacaaacgcttacgtgtgaccaacaagaacaacatttgcatcctcattgtgtgctgcaatt |
414 |
Q |
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| T |
41697838 |
caattttatttgaattcgagaacaaaatatgaatatgaatacaaacgcttacgtgtgaccaacaagaacaacatttgcatcctcattgtgtgctgcaatt |
41697937 |
T |
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| Q |
415 |
gccatagattcatcaacaacaagaactgtagaacactcgtttgaggaatcatcttctaaacttttcaatccttctttcggaacaaatgcaagaatttcct |
514 |
Q |
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| T |
41697938 |
gccatagattcatcaacaacaagaactgtagaacactcatttgaggaatcatcttctaaacttttcaatccttctttcggaacaaatgcaagaatttcct |
41698037 |
T |
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| Q |
515 |
tcttgaaattaataagtaaaatctgctcac |
544 |
Q |
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| T |
41698038 |
tcttgaaattaataagtaaaatctgctcac |
41698067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 570 - 751
Target Start/End: Original strand, 41698097 - 41698282
Alignment:
| Q |
570 |
ttactattaattatacatacatgcaataacattggtgtctgtttctttctt----gtagaggaaatttacatcaagaagaggcacaccacttccagctgc |
665 |
Q |
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| T |
41698097 |
ttactattaattatacatacatgcaataacattggtgtatgtttctttctttctagtagaggaaatttacatcaagaagaggcacaccacttccagctgc |
41698196 |
T |
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| Q |
666 |
agtccccgagagttcatcccaatacatagggcatttggtttgattattatgaaaacgtgctttgaggagcgattctgattgaggag |
751 |
Q |
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| T |
41698197 |
agtccccaagagttcatcccaatacatagggaatttggtttgattattatgaaaaagtgctttgagaagtgattctgattgaggag |
41698282 |
T |
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