View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14775_low_10 (Length: 230)
Name: NF14775_low_10
Description: NF14775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14775_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 135 - 212
Target Start/End: Complemental strand, 50389254 - 50389179
Alignment:
| Q |
135 |
aactattacacatgaaagcactcaattgggttcgaccacgaatgatttagacaccataaccaatgtcttgaaattgtt |
212 |
Q |
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| T |
50389254 |
aactattacacatgaaagcactcaattgggttcgaccacgaatgatttag--accataaccaatgtcttgaaattgtt |
50389179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 50389378 - 50389328
Alignment:
| Q |
11 |
acatcatcaacctaagatacaaatcaccaaaacctcaattgagaataatcc |
61 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50389378 |
acatcaacaacctaagatacaaatcaccaaaacctcaattgagaataatcc |
50389328 |
T |
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