View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14775_low_3 (Length: 339)
Name: NF14775_low_3
Description: NF14775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14775_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 51808708 - 51809012
Alignment:
| Q |
1 |
aggtcaatgaagggagattatttttatggtagaaaagaagatggaaagcaatgtaaatagaaagatagaaaaaactattagaagaagtttaagtttcagg |
100 |
Q |
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| T |
51808708 |
aggtgaatgaagggagattattgttatggtagaaaagaagatggaaagcaatgtaaatagaaagatagaaaaaactattagaag---ttttagtttcagg |
51808804 |
T |
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| Q |
101 |
ctgttacttgcggcttattatgtgcatgctttcaagaactttgaaatggtattaaaaccgttcaannnnnnnnnataaaatttgtcaatataggatagga |
200 |
Q |
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| T |
51808805 |
ctgttacttgcggcttattatgtgcatgctttcaagaactttgaaatggtattaaaaccgttcaatttttttttataaaatttgtctatataggatagga |
51808904 |
T |
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| Q |
201 |
tagtcatggtgcaagaggaaaaagatacaatttttccatttatcactctccagagaccatatataatatgtgactactttcaaacaatgcagaggcaaga |
300 |
Q |
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| T |
51808905 |
tagtcatggtgcaagaggaaaaagatacaatttttccatttatcactctccagagaccatatataatatgtgactactttcaaacaatgcagaggcaaga |
51809004 |
T |
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| Q |
301 |
cactgtgg |
308 |
Q |
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| T |
51809005 |
cagtgtgg |
51809012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 51804794 - 51804852
Alignment:
| Q |
6 |
aatgaagggagattatttttatggtagaaaagaagatggaaagcaatgtaaatagaaaga |
65 |
Q |
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| T |
51804794 |
aatgaagggagattattgttatggttgaaaa-aggatggaaagaaaagtaaatagaaaga |
51804852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 51773201 - 51773259
Alignment:
| Q |
7 |
atgaagggagattatttttatggtagaaaagaagatggaaagcaatgtaaatagaaaga |
65 |
Q |
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||||| |||| ||||||||||||||||||| ||||||||| | | ||||||||||||| |
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| T |
51773201 |
atgaaaggaggttatttttatggtagaaaacaagatggaaggagaagtaaatagaaaga |
51773259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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