View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14775_low_4 (Length: 301)
Name: NF14775_low_4
Description: NF14775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14775_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 15159188 - 15159013
Alignment:
| Q |
1 |
atgattgaattatacctcagctggctgagaagaaggagaaggtgcaaaagaagatgatggtgttgaagcaaaagaatcatgtcttgttaaagaggtttta |
100 |
Q |
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| T |
15159188 |
atgattgaattatacctcagctggctgagaagaaggagaaggtgcaaaagaagatgatggtgttgaagcaaaagaatcatgtcttgttaaagaggtttta |
15159089 |
T |
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| Q |
101 |
aatgattgcaatcttctcattgttgcatgataatttccatcagaaattttcctagtaggtaaatttttgtcaccat |
176 |
Q |
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| T |
15159088 |
aatgattgcaattttctcattgttacatgataatttccatcagaaattttcctagcaggtaaatttttgtcaccat |
15159013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 232 - 286
Target Start/End: Complemental strand, 15158957 - 15158903
Alignment:
| Q |
232 |
ttttctagtcatttttgttggtatatttggtgagaggtttaagattctataaggt |
286 |
Q |
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| T |
15158957 |
ttttctagtcatttttgttggtatatttggtgagaggtttaaaattctataaggt |
15158903 |
T |
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