View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14776_high_11 (Length: 410)
Name: NF14776_high_11
Description: NF14776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14776_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 14 - 395
Target Start/End: Original strand, 53556264 - 53556645
Alignment:
| Q |
14 |
agaagtttctaataatgttcattttaattccctgcttaattaatcttgttcagcttaatctttcccatcgtatcatgtgaatcttccattattttctagg |
113 |
Q |
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| T |
53556264 |
agaagtttctaataatgttcattttaattccctgcttaattaatcttgttcagcttaatctttcccatcgtatcatgtgaatcttctattattttctagg |
53556363 |
T |
|
| Q |
114 |
taattatggagctctattttagagggtaagtttcaaatctctttgaacctttagacattgatgtttaagacctaactcacataagtttttccattaaatc |
213 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53556364 |
taattatggagctctattttagagggtaaatttcaaatctcttcgaacctttagacattgatgtttaagacctaactcacataagtttttccattaaatc |
53556463 |
T |
|
| Q |
214 |
gtacattttctatcaatacaaaaaatatataactaattaaaatggaacattttcaaggataatgccgacaaagtaagaggatggagggttcttttgatca |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53556464 |
gtacattttctatcaatacaaaaaatatataactaattaaaatggaacattttcaaggataatgccgacaaagtaagaggatggagggttcttttgatca |
53556563 |
T |
|
| Q |
314 |
aatactattgtagcatcatgttcatcaagtattaaactaatggaacttgtgaacaagcagtgtattattttaatgaaagaag |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
53556564 |
aatactattgtagcatcatgttcatcaagtattaaactaatggagcttgtgaaaaagcagtgtattattttaatgaaagaag |
53556645 |
T |
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