View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14776_high_13 (Length: 406)
Name: NF14776_high_13
Description: NF14776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14776_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 169 - 394
Target Start/End: Complemental strand, 31770684 - 31770459
Alignment:
| Q |
169 |
tcaacgtagccattgagaatttcagcaattcctcaatccaatcgacatcaaaaacaaaaatttgaacaaacccattaacaattaactgcttaagaaaaat |
268 |
Q |
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| T |
31770684 |
tcaacgtagccattgagaatttcagcaattcctcaatccaatcgacatcaaaaacaaaaatttgaacaaacccattaacaattgactgcttaagaaaaat |
31770585 |
T |
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| Q |
269 |
gggttggaattagatttacaaaacaacatgttttttcaattttcgttttcactacagaaactcaatcatatgaaaccttcatggcacgtacctcagtttc |
368 |
Q |
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| T |
31770584 |
gggttggaattagatttacaaaacaacatgttttttcaattttcgttttcactacagaaactcaatcatatgaaaccttcatggcacgtacctcagtttc |
31770485 |
T |
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| Q |
369 |
atgttgtattgcagaggtgaattctg |
394 |
Q |
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| T |
31770484 |
atgttgtattgcagaggtgaattctg |
31770459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 31770842 - 31770703
Alignment:
| Q |
1 |
taaaccacataatatattaaatattatatgctcaaatttatattccagaatagattcgatccaatttcactgatgggaaccacataatgaatttgagcca |
100 |
Q |
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| T |
31770842 |
taaaccacataatatattaaatattatatgctcaaatttatattccagaatagattcgatccaatttcactgatgggaaccacataatgaatttgagcca |
31770743 |
T |
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| Q |
101 |
caacttaataaaaagattcaaacactttaacaacaacaac |
140 |
Q |
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| T |
31770742 |
caacttaataaaaagattcaaacactttaacaacaacaac |
31770703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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