View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14776_high_20 (Length: 338)

Name: NF14776_high_20
Description: NF14776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14776_high_20
NF14776_high_20
[»] scaffold0003 (1 HSPs)
scaffold0003 (12-318)||(8966-9266)
[»] chr7 (1 HSPs)
chr7 (12-318)||(16420254-16420554)
[»] chr8 (3 HSPs)
chr8 (12-318)||(5538211-5538515)
chr8 (199-291)||(44667720-44667810)
chr8 (220-279)||(6816940-6816995)
[»] chr3 (1 HSPs)
chr3 (49-202)||(19932297-19932449)
[»] chr1 (5 HSPs)
chr1 (49-202)||(18901509-18901668)
chr1 (148-248)||(51784667-51784772)
chr1 (19-61)||(18901445-18901487)
chr1 (49-87)||(51784794-51784832)
chr1 (19-52)||(51784859-51784892)
[»] chr5 (2 HSPs)
chr5 (63-249)||(37940325-37940512)
chr5 (19-61)||(37940550-37940592)
[»] chr6 (2 HSPs)
chr6 (227-318)||(3508666-3508754)
chr6 (224-296)||(34518720-34518788)
[»] scaffold0004 (1 HSPs)
scaffold0004 (225-318)||(188989-189083)
[»] chr2 (1 HSPs)
chr2 (224-309)||(2038040-2038125)


Alignment Details
Target: scaffold0003 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 12 - 318
Target Start/End: Original strand, 8966 - 9266
Alignment:
Q  12 gtcgaagaatatgtgccactagatattactagctagaatttattagagtaatatataatcagattagcaagaaagtaggaaaacaaaaggaagcatagag 111  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||    
T  8966 gtcgaaaaatatgtgccactagatattactagctagtatttattagagtaatata--ataagattagcaagaaagtaggaaaacaaaaggaagcatagag 9063  T
Q  112 caaaggaagtgattgacctgtggaaataaacatcccacgtttcttcccaatcccattttccactatgtcccatattgttaggaaataagttcgtgggaga 211  Q
    ||||||||||||||| | |||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  9064 caaaggaagtgattggcgtgtggaaataaagatcc-acgtttcttcccaatcccattttccactatgttccatattgttaggaaataagttagtgggaga 9162  T
Q  212 attattagtaaccggttcctattctttttcacacacacaccccctttctatactttgaagaacaaaaacaaaatacatagtgagaaagagaaagagaacg 311  Q
    |||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  9163 attattagtaaccggttcctattctttttcacacaca---cccctttctatactttgaagaacaaaaacaaaatacatagtgagaaagagaaagagaatg 9259  T
Q  312 ggaaagg 318  Q
    |||||||    
T  9260 ggaaagg 9266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 12 - 318
Target Start/End: Original strand, 16420254 - 16420554
Alignment:
Q  12 gtcgaagaatatgtgccactagatattactagctagaatttattagagtaatatataatcagattagcaagaaagtaggaaaacaaaaggaagcatagag 111  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||    
T  16420254 gtcgaaaaatatgtgccactagatattactagctagtatttattagagtaatata--ataagattagcaagaaagtaggaaaacaaaaggaagcatagag 16420351  T
Q  112 caaaggaagtgattgacctgtggaaataaacatcccacgtttcttcccaatcccattttccactatgtcccatattgttaggaaataagttcgtgggaga 211  Q
    ||||||||||||||| | |||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  16420352 caaaggaagtgattggcgtgtggaaataaagatcc-acgtttcttcccaatcccattttccactatgttccatattgttaggaaataagttagtgggaga 16420450  T
Q  212 attattagtaaccggttcctattctttttcacacacacaccccctttctatactttgaagaacaaaaacaaaatacatagtgagaaagagaaagagaacg 311  Q
    |||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  16420451 attattagtaaccggttcctattctttttcacacaca---cccctttctatactttgaagaacaaaaacaaaatacatagtgagaaagagaaagagaatg 16420547  T
Q  312 ggaaagg 318  Q
    |||||||    
T  16420548 ggaaagg 16420554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 12 - 318
Target Start/End: Complemental strand, 5538515 - 5538211
Alignment:
Q  12 gtcgaagaatatgtgccactagatattactagctagaatttattagagtaatatata--atcagattagcaagaaagtaggaaaacaaaaggaagcatag 109  Q
    |||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||    
T  5538515 gtcgaaaaatatgtgccattagatattactagctagtatttattagagtaatatatataataagattagcaagaaagtaggaaaacaaaaggaagcatag 5538416  T
Q  110 agcaaa-ggaagtgattgacctgtggaaataaacatcccacgtttcttcccaatcccattttccactatgtcccatattgttaggaaataagttcgtggg 208  Q
    |||||| ||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  5538415 agcaaaaggaagtgattg-cgtgtggaaataaacatcc-acgtttcttcccaatcccattttccactatgtcccatattgttaggaaataagctagtggg 5538318  T
Q  209 agaattattagtaaccggttcctattctttttcacacacacaccccctttctatactttgaagaacaaaaacaaaatacatagtgagaaagagaaagaga 308  Q
    |||||||||||||||| |||||||||| ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5538317 agaattattagtaaccagttcctattccttttcacacaca---cccctttctatactttgaagaacaaaaacaaaatacatagtgagaaagagaaagaga 5538221  T
Q  309 acgggaaagg 318  Q
    ||||||||||    
T  5538220 acgggaaagg 5538211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 199 - 291
Target Start/End: Original strand, 44667720 - 44667810
Alignment:
Q  199 agttcgtgggagaattattag--taaccggttcctattctttttcacacacacaccccctttctatactttgaagaacaaaaacaaaatacatag 291  Q
    |||| |||||||| |||||||  |||||||||||||||| ||||||||||||| |     |||||| ||||||||||||||||||||| ||||||    
T  44667720 agttagtgggagagttattagaataaccggttcctattcattttcacacacactca----ttctatgctttgaagaacaaaaacaaaagacatag 44667810  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 279
Target Start/End: Original strand, 6816940 - 6816995
Alignment:
Q  220 taaccggttcctattctttttcacacacacaccccctttctatactttgaagaacaaaaa 279  Q
    |||||||||| |||||||||| ||||||||    || |||||||||||||||||||||||    
T  6816940 taaccggttcttattctttttaacacacac----ccattctatactttgaagaacaaaaa 6816995  T

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Target: chr3 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 49 - 202
Target Start/End: Original strand, 19932297 - 19932449
Alignment:
Q  49 atttattagagtaatatataatcagattagcaagaaagtaggaaaacaaaaggaagcatagagcaaaggaagtgattgacctgtggaaataaacatccca 148  Q
    |||||||| ||||||||||||| |||||||||| ||||||||||| ||||||||||||||||| ||||||| ||||||||  |||||||||||||| |||    
T  19932297 atttattaaagtaatatataataagattagcaataaagtaggaaagcaaaaggaagcatagagaaaaggaactgattgactagtggaaataaacat-cca 19932395  T
Q  149 cgtttcttcccaatcccattttccactatgtcccatattgttaggaaataagtt 202  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  19932396 cgtttcttcccaatcccattttccactatgttccatatttttaggaaataagtt 19932449  T

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Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 49 - 202
Target Start/End: Original strand, 18901509 - 18901668
Alignment:
Q  49 atttattagagtaatatataatcagattagcaagaaagtaggaaaacaaaaggaagcatagagcaaaggaagtgattgacctgtggaaataaacat---- 144  Q
    |||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||  ||||||||||||||        
T  18901509 atttattaaagtaatatataataagattagcaagaaagtaggaaagcaaaaggaagcatagagaaaaggaactgattgactggtggaaataaacattaaa 18901608  T
Q  145 --cccacgtttcttcccaatcccattttccactatgtcccatattgttaggaaataagtt 202  Q
       |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  18901609 catccacgtttcttcccaatcccattttccactatgttccatatttttaggaaataagtt 18901668  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 148 - 248
Target Start/End: Complemental strand, 51784772 - 51784667
Alignment:
Q  148 acgtttcttcccaatcccattttccactatgtcccatattgttaggaaataagttcgtgggagaattat-----tagtaaccggttcctattctttttca 242  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||  ||  ||||     || |||||||||||||||||||||||    
T  51784772 acgtttcttcccaatcccattttccactatgttccatatttttaggaaataagttagtgacagtgttattataataataaccggttcctattctttttca 51784673  T
Q  243 cacaca 248  Q
    | ||||    
T  51784672 cccaca 51784667  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 18901445 - 18901487
Alignment:
Q  19 aatatgtgccactagatattactagctagaatttattagagta 61  Q
    |||||||| |||||||||||||||||||| |||||||||||||    
T  18901445 aatatgtgacactagatattactagctagtatttattagagta 18901487  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 87
Target Start/End: Complemental strand, 51784832 - 51784794
Alignment:
Q  49 atttattagagtaatatataatcagattagcaagaaagt 87  Q
    |||||||| ||||||||||||| ||||||||||||||||    
T  51784832 atttattaaagtaatatataataagattagcaagaaagt 51784794  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 51784892 - 51784859
Alignment:
Q  19 aatatgtgccactagatattactagctagaattt 52  Q
    ||||||||||||||||||||||||||||| ||||    
T  51784892 aatatgtgccactagatattactagctagtattt 51784859  T

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Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 63 - 249
Target Start/End: Complemental strand, 37940512 - 37940325
Alignment:
Q  63 tatataatcagattagcaagaaagtaggaaaacaaaaggaagcatagagcaaaggaagtgattgacctgtggaaataaacatcccacgtttcttcccaat 162  Q
    |||||||| ||||||||||||||||||| || ||||| |||||||||   ||||||| ||||| ||  |||||||||||||||| |||||||||||||||    
T  37940512 tatataataagattagcaagaaagtaggtaagcaaaaagaagcataggaaaaaggaactgattaactagtggaaataaacatcc-acgtttcttcccaat 37940414  T
Q  163 cccattttccactatgtcccatattgttaggaaataagttcgtgggagaattat--tagtaaccggttcctattctttttcacacacac 249  Q
    | ||||||||||||||| ||||||| |||||||||||||| |||  |   ||||  || |||||||||||||||||||||||| |||||    
T  37940413 ctcattttccactatgttccatatttttaggaaataagttagtgacaatgttattataataaccggttcctattctttttcacccacac 37940325  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 37940592 - 37940550
Alignment:
Q  19 aatatgtgccactagatattactagctagaatttattagagta 61  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  37940592 aatatgtgccactagatattactagctagtatttattagagta 37940550  T

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Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 227 - 318
Target Start/End: Original strand, 3508666 - 3508754
Alignment:
Q  227 ttcctattctttttcacacacacaccccctttctatactttgaagaacaaaaacaaaatacatagtgagaaagagaaagagaacgggaaagg 318  Q
    |||||| ||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  3508666 ttcctactctttttcacacacac---ccctttctatactttgaagaacaaaaacaaaatacatagtgagaaagagaaagagaataggaaagg 3508754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 296
Target Start/End: Complemental strand, 34518788 - 34518720
Alignment:
Q  224 cggttcctattctttttcacacacacaccccctttctatactttgaagaacaaaaacaaaatacatagtgaga 296  Q
    ||||||||||||||||||||||| ||    || |||||||||||||||||||||| |||||||||||| ||||    
T  34518788 cggttcctattctttttcacacatac----ccattctatactttgaagaacaaaatcaaaatacatagagaga 34518720  T

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Target: scaffold0004 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 225 - 318
Target Start/End: Complemental strand, 189083 - 188989
Alignment:
Q  225 ggttcctattctttttcacacacacaccccctttctatactttgaagaacaaaa-----acaaaatacatagtgagaaagagaaagagaacgggaaagg 318  Q
    |||||||||| ||||||||||| ||    || ||||||||||||||||||||||     ||||||||||||| ||||||||||||| ||||||||||||    
T  189083 ggttcctattgtttttcacacatac----ccattctatactttgaagaacaaaacaaaaacaaaatacatagggagaaagagaaagggaacgggaaagg 188989  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 309
Target Start/End: Original strand, 2038040 - 2038125
Alignment:
Q  224 cggttcctattctttttcacacacacaccccctttctatactttgaagaaca-----aaaacaaaatacatagtgagaaagagaaagagaa 309  Q
    ||||||||||||||||     ||||||  ||| |||||||||||||||||||     ||||||||||||||||  ||||||||||||||||    
T  2038040 cggttcctattctttt-----cacacatacccattctatactttgaagaacaaaacaaaaacaaaatacataggaagaaagagaaagagaa 2038125  T

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