View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14776_high_22 (Length: 324)

Name: NF14776_high_22

Description: NF14776

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF14776_high_22

[»] chr5 (1 HSPs)

Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 220; E-Value: 1e-121

Query Start/End: Original strand, 18 - 324

Target Start/End: Original strand, 5172257 - 5172562

Alignment:

Q	18	agatgtgactcatgtttaactaacatgaaacagtgtatcaatcaaatctcaattcattgtaatgttctagtttggttggtagataagcatgatannnnnn	117	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	5172257	agatgtgactcatgtttaactaacatgaaacagtgtatcaatcaaatctcaattcattgtaatgttttagtttggttggtagataagcatgatatttttt	5172356	T

Q	118	nnnnnnnnnnnnnnnctgagacaacaaatatgtacataatatgccaatttagaggtcttcattatagtaacagggattgcttcatagctattttggttgg	217	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	5172357	tctatttttatttttctgagacaacaaatatgtacataatatgccaatttagaggtcttcattatagtaacagggattgcttcatagctattttggttgg	5172456	T

Q	218	gtttgtggcttttgctgaaaaatactcgttttctttttagttataaagaatcaacttctgatgaattatttgatatagttaaaaatcgagtttgatgtag	317	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	5172457	ctttgtggattttgctgaaaaatacacgttttc-ttttagttataaagaatcaacttctgatgaattatttgatatagttaaaaatcgagtttgatgtag	5172555	T

Q	318	attaaat	324	Q
		\|\|\|\|\|\|\|
T	5172556	attaaat	5172562	T

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