View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14776_high_23 (Length: 316)
Name: NF14776_high_23
Description: NF14776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14776_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 4654050 - 4654344
Alignment:
| Q |
1 |
ccattgataaatggagctaatatattgaaaatagtgaatttttctagtcatggcttctgaaaagcgatggagtacattgatactactacttgtagtaatg |
100 |
Q |
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| T |
4654050 |
ccattgataaatggagctaatatattgaaaatagtgaattttcttagtcatggcttctgaaaagcgatggagtacattgatactactacttgtagtaatg |
4654149 |
T |
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| Q |
101 |
gcttctgcatcattagtcatggcatcctcttcctgctcttccatcttcagcttcggcgaggtgattccctcgccgacaccagcaacttgtatttcagcaa |
200 |
Q |
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| T |
4654150 |
gcttctgcatcattagtcatggcatcctcttcctgctcttccatcttcagcttc-----ggtgattccctcgccgacaccggcaacttgtatttcagcaa |
4654244 |
T |
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| Q |
201 |
ccagcaaccctcccatcactgcctatttcctccctacggagaaacgtactttcatcatccgtctggacgttgctccgatggacgcctcatcattgatttc |
300 |
Q |
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| T |
4654245 |
ccagcaaccctcccatcactgcctatttcctccctacggagaaacgtactttcatcatccgtctggacgttgctccgatggacgcctcatcattgatttc |
4654344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 136 - 300
Target Start/End: Original strand, 4632940 - 4633099
Alignment:
| Q |
136 |
ctcttccatcttcagcttcggcgaggtgattccctcgccgacaccagcaacttgtatttcagcaaccagcaaccctcccatcactgcctatttcctccct |
235 |
Q |
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||||||||||||||||||||| ||||||| | |||||||| ||||| ||||| ||||| ||| | |||||| ||||||| | || ||||||| |
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| T |
4632940 |
ctcttccatcttcagcttcgg-----tgattccattgccgacactggcaacctgtatctcagctcccaaccaccctctgatcactgtttcttccctccct |
4633034 |
T |
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| Q |
236 |
acggagaaacgtactttcatcatccgtctggacgttgctccgatggacgcctcatcattgatttc |
300 |
Q |
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| T |
4633035 |
atggccaaacttactttcatcatccgtctggacgttgctccgatggacgcctcatcattgatttc |
4633099 |
T |
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